View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518_low_15 (Length: 243)

Name: NF8518_low_15
Description: NF8518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518_low_15
NF8518_low_15
[»] chr2 (16 HSPs)
chr2 (19-243)||(9292365-9292589)
chr2 (81-239)||(9283721-9283879)
chr2 (19-243)||(9316465-9316689)
chr2 (19-243)||(9357620-9357841)
chr2 (78-243)||(9329036-9329201)
chr2 (57-243)||(10353558-10353744)
chr2 (80-243)||(9060665-9060828)
chr2 (78-243)||(9321413-9321578)
chr2 (19-157)||(9275044-9275182)
chr2 (81-150)||(10372391-10372460)
chr2 (57-150)||(10348312-10348405)
chr2 (187-243)||(10336281-10336337)
chr2 (187-243)||(10348228-10348284)
chr2 (193-239)||(8573142-8573188)
chr2 (187-243)||(10372307-10372363)
chr2 (182-243)||(7115271-7115332)
[»] chr3 (1 HSPs)
chr3 (19-243)||(37462935-37463159)
[»] chr4 (1 HSPs)
chr4 (57-243)||(26575310-26575496)
[»] scaffold0667 (2 HSPs)
scaffold0667 (187-242)||(4921-4976)
scaffold0667 (19-139)||(5018-5138)
[»] chr8 (2 HSPs)
chr8 (189-243)||(41966362-41966416)
chr8 (81-137)||(41966254-41966310)
[»] chr1 (4 HSPs)
chr1 (189-236)||(29467429-29467476)
chr1 (189-240)||(29423708-29423759)
chr1 (192-243)||(29452955-29453006)
chr1 (193-243)||(29442970-29443020)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 9292589 - 9292365
Alignment:
Q  19 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9292589 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatcg 9292490  T
Q  119 gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccatta 218  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9292489 gattatcccttttctccctcttgctatccctaacattctcgagtctgaaaacattgatcgcgccggtgtatgcgttcacggcttcggttatgatccatta 9292390  T
Q  219 accggcgattacaaactcctcagaa 243  Q
    |||||||||||||||||||||||||    
T  9292389 accggcgattacaaactcctcagaa 9292365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 9283721 - 9283879
Alignment:
Q  81 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcg 180  Q
    ||||||||| ||| |||| ||||||| | ||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||    
T  9283721 gaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatccctaacattgtggagtctgaaaacattgaacgcg 9283820  T
Q  181 caggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctc 239  Q
      ||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  9283821 gcggtgtatgcattcacggcttcggttttgatcctttaaccggcgattacaaactcctc 9283879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 9316689 - 9316465
Alignment:
Q  19 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatag 118  Q
    |||||||||| ||||||||||||||| | ||||||   |||| ||||||||||| | | |||||||||||| ||| |||||||||||| | ||||||| |    
T  9316689 gtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaaccctaacacccgtaaacatcg 9316590  T
Q  119 gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccatta 218  Q
     ||||||||||| || |||||||||||||||||||||||||| ||||| ||     ||||||  ||| ||||||||||||||||||||| |||||||| |    
T  9316589 tattatccctttccttcctcttgctatccctaacattcttgaatctgacaaacccaatcgcggcggtatatgcgttcacggcttcggttttgatccatca 9316490  T
Q  219 accggcgattacaaactcctcagaa 243  Q
    || || |||||||||||||||||||    
T  9316489 acaggtgattacaaactcctcagaa 9316465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 9357841 - 9357620
Alignment:
Q  19 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatag 118  Q
    ||||||||||||||||||| |||||| || |||||   |||| ||||||| ||||| | ||||||||| || ||| ||||| |||||  | |||||||      
T  9357841 gtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaaccataacatccgtaaacatca 9357742  T
Q  119 gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccatta 218  Q
     ||||||||||| ||||||||| ||||||||||||||||    |||   ||||||||  |||   |||||||||||||||||||||||| |||||| |||    
T  9357741 cattatccctttcctccctcttcctatccctaacattctccgatctttcaacattgacggcg---gtgtatgcgttcacggcttcggttttgatccttta 9357645  T
Q  219 accggcgattacaaactcctcagaa 243  Q
    |||||||||||||||||||||||||    
T  9357644 accggcgattacaaactcctcagaa 9357620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 243
Target Start/End: Complemental strand, 9329201 - 9329036
Alignment:
Q  78 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatc 177  Q
    |||||||||||| ||| |||||||||||| | ||||||| | ||||||||||| || |||||||||||||||||||||||||| ||||| |||||  |||    
T  9329201 aacgaaatcacaatctggaaccctaacacccgtaaacatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccatc 9329102  T
Q  178 gcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    ||       ||||||||||||| ||||||| |||||| ||| |||| |||||||||||||||||||    
T  9329101 gcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaa 9329036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 10353744 - 10353558
Alignment:
Q  57 ttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattc 156  Q
    |||||||||||| ||||||| |||||||||||| | | |||||| ||||| | ||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  10353744 ttcacgcatcctaacgcccccaacgaaatcacaatatggaaccccaacacccgtaagcatcggattatcccttttctccctcttcctatccctaacattc 10353645  T
Q  157 ttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    |  | ||||| |||  | | || |   |  |||||||||| |||||||||| |||| |  || ||||||||||||||||||||||||    
T  10353644 tccaatctgacaaccctaaccgtggctgcttatgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaa 10353558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 243
Target Start/End: Original strand, 9060665 - 9060828
Alignment:
Q  80 cgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgc 179  Q
    ||||| |||| ||| |||||||||||| |  ||| || |||  ||||||||| |||||||| ||||||||||||||   || ||||| |||    |||||    
T  9060665 cgaaaccacaatctggaaccctaacacccgcaaagatcggaccatcccttttatccctcttcctatccctaacattgaggactctgacaaccccaatcgc 9060764  T
Q  180 gcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    |  ||| ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||    
T  9060765 ggcggtatatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaa 9060828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 243
Target Start/End: Complemental strand, 9321578 - 9321413
Alignment:
Q  78 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatc 177  Q
    |||||||||||| ||| |||||||| ||||| ||| ||| | || |||||||| || |||||| |||||||| ||||| | || || || |||||  |||    
T  9321578 aacgaaatcacaatctggaaccctagcactcgtaagcatcgtatgatccctttcctacctcttcctatccctgacattatggaatccgacaacatcaatc 9321479  T
Q  178 gc-gcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    || || | | |||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||    
T  9321478 gctgctgct-tatgcgttcatggtttcggttttgatcctttaaccggcgattacaaactcctcagaa 9321413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 9275182 - 9275044
Alignment:
Q  19 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatag 118  Q
    ||||||||||| | || || |||||| |||||| |  ||||| ||||||| |||   | || ||||| ||| ||| ||||||||||||   ||||||| |    
T  9275182 gtaacggcctcattgctatctccaatggccaaaccgccttcaggcatcctgacgatgcaaatgaaattacaatctggaaccctaacaccggtaaacatcg 9275083  T
Q  119 gattatcccttttctccctcttgctatccctaacattct 157  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  9275082 gattatcccttttctccctcttcctatacctaacattct 9275044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 10372460 - 10372391
Alignment:
Q  81 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatcccta 150  Q
    ||||||||| ||| |||||||||||| | |||||||||| |||||||||||||||||||| |||| ||||    
T  10372460 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 10372391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 10348405 - 10348312
Alignment:
Q  57 ttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatcccta 150  Q
    |||||||||||| ||  ||  |||||||||||| ||| |||||||||||| | |||||||   ||||||||||||||||||||| |||| ||||    
T  10348405 ttcacgcatcctaacaacctcaacgaaatcacaatctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctattccta 10348312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 10336337 - 10336281
Alignment:
Q  187 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    ||||||||||||| ||||||| |||| ||||| ||| ||||||||||||||||||||    
T  10336337 tatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaa 10336281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 10348284 - 10348228
Alignment:
Q  187 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    ||||||||||||||||||||| ||||| | || |||| |||||||||||||||||||    
T  10348284 tatgcgttcacggcttcggttttgatcaaatatccggtgattacaaactcctcagaa 10348228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 8573142 - 8573188
Alignment:
Q  193 ttcacggcttcggttatgatccattaaccggcgattacaaactcctc 239  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  8573142 ttcacggcttcggttttgatctattaaccgccgattacaaactcctc 8573188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 10372363 - 10372307
Alignment:
Q  187 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    |||||||||| |||||||||| |||| | ||| |||||||| |||||||||||||||    
T  10372363 tatgcgttcatggcttcggttttgattctttatccggcgatcacaaactcctcagaa 10372307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 7115271 - 7115332
Alignment:
Q  182 aggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    |||| ||||| ||||||||||||||| |||||| ||||| |  ||||||||||| |||||||    
T  7115271 aggtctatgctttcacggcttcggttttgatcctttaacagatgattacaaacttctcagaa 7115332  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 37463159 - 37462935
Alignment:
Q  19 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatag 118  Q
    |||||||||||||||| || |||||| ||||||||   |||||||||||| ||||| | |||||||||||| ||| |||||||||||| | |||||||      
T  37463159 gtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaacacacgtaaacatct 37463060  T
Q  119 gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccatta 218  Q
    ||||||||||||||||||| |  || ||||| ||||| | || ||  | |||  | | ||||   |  ||||||||||||||||||||| |||| | |||    
T  37463059 gattatcccttttctccctatgcctgtcccttacattatggaatcaaacaaccctaaccgcggctgcttatgcgttcacggcttcggttttgattcttta 37462960  T
Q  219 accggcgattacaaactcctcagaa 243  Q
    |||||||||||||||||||||||||    
T  37462959 accggcgattacaaactcctcagaa 37462935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 26575496 - 26575310
Alignment:
Q  57 ttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattc 156  Q
    |||||||||||  ||||||| ||||||||| || ||| ||||||| ||||   |||| || ||||||||||||||||||||||| | |||||||||||||    
T  26575496 ttcacgcatcccaacgcccccaacgaaatcgcaatctggaacccttacaccggtaaatatcggattatcccttttctccctcttcccatccctaacattc 26575397  T
Q  157 ttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    |  | ||||| |||  | |||| |   |  ||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||    
T  26575396 tccaatctgacaaccctaatcgtggctgcttatgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaa 26575310  T

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Target: scaffold0667 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 4976 - 4921
Alignment:
Q  187 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcaga 242  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  4976 tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaaatcctcaga 4921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 5138 - 5018
Alignment:
Q  19 gtaacggcctcctcgccatttccaatagccaaatctgct-tcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacata 117  Q
    ||||||||||||||||| |||||||  || ||||| ||| |||  |||||| ||||| | |||||||||||| ||| |||||||||||  | |||||||     
T  5138 gtaacggcctcctcgccgtttccaacggcgaaatc-gctctcagacatcctaacgccgccaacgaaatcacaatctggaaccctaacatccgtaaacatc 5040  T
Q  118 ggattatcccttttctccctct 139  Q
      ||||||||||||||||||||    
T  5039 acattatcccttttctccctct 5018  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 41966362 - 41966416
Alignment:
Q  189 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    ||||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||    
T  41966362 tgcgttcacggattcggttttgatccattaaccagcgatcacaaactcctcagaa 41966416  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 41966254 - 41966310
Alignment:
Q  81 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccct 137  Q
    ||||||||| ||| |||||||||||    ||||||| ||||||||||||||||||||    
T  41966254 gaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccct 41966310  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 29467429 - 29467476
Alignment:
Q  189 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactc 236  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  29467429 tgcgttcacggcttcggttttgatccattaaccgatgattacaaactc 29467476  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 29423759 - 29423708
Alignment:
Q  189 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctca 240  Q
    |||||| |||||||||||| |||||||||||| |  ||||||||||||||||    
T  29423759 tgcgtttacggcttcggttttgatccattaactgatgattacaaactcctca 29423708  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 29452955 - 29453006
Alignment:
Q  192 gttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    ||||||||||| |||| |||||| |||| || ||||||||||||||||||||    
T  29452955 gttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaa 29453006  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 29442970 - 29443020
Alignment:
Q  193 ttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    ||||||||||||||| ||||||||| |||  ||||||||||||| ||||||    
T  29442970 ttcacggcttcggttttgatccattgaccaacgattacaaactcatcagaa 29443020  T

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