View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518_low_16 (Length: 229)

Name: NF8518_low_16
Description: NF8518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518_low_16
NF8518_low_16
[»] chr2 (2 HSPs)
chr2 (122-229)||(43875871-43875978)
chr2 (1-74)||(43876026-43876099)
[»] chr7 (2 HSPs)
chr7 (149-229)||(13050356-13050436)
chr7 (155-229)||(48360031-48360105)
[»] chr3 (1 HSPs)
chr3 (149-229)||(33506857-33506937)
[»] chr4 (2 HSPs)
chr4 (151-229)||(25943427-25943505)
chr4 (151-229)||(13150432-13150510)
[»] chr8 (1 HSPs)
chr8 (149-229)||(13002350-13002430)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 43875978 - 43875871
Alignment:
Q  122 gttaaatacccatatgtgaatttagagatgagcaatgctatatggtacggttaatttcacgtgcgaaaactgacgaatacacacatgtctagttttaaag 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43875978 gttaaatacccatatgtgaatttagagatgagcaatgctatatggtacggttaatttcacgtacgaaaactgacgaatacacacatgtctagttttaaag 43875879  T
Q  222 gaataaaa 229  Q
    ||||||||    
T  43875878 gaataaaa 43875871  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 43876099 - 43876026
Alignment:
Q  1 ttattatttcaatctttttctttccttttctatgatgaacttgatcttcgtagtacttgagtttcaaagctcta 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43876099 ttattatttcaatctttttctttccttttctatgatgaacttgatcttcgtagtacttgagtttcaaagctcta 43876026  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 13050356 - 13050436
Alignment:
Q  149 atgagcaatgctatatggtacggttaatttcacgtgcgaaaactgacgaatacacacatgtctagttttaaaggaataaaa 229  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  13050356 atgagcaatgctatatggtacggttaatttcacgtacgaaaactgacgaatgcacacatgtctagttttaaaggaataaaa 13050436  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 48360105 - 48360031
Alignment:
Q  155 aatgctatatggtacggttaatttcacgtgcgaaaactgacgaatacacacatgtctagttttaaaggaataaaa 229  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||    
T  48360105 aatgttatatggtacggttaatttcacgtacgaaaactgacgaatgcacacatgtctaattttaaaggaataaaa 48360031  T

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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 33506857 - 33506937
Alignment:
Q  149 atgagcaatgctatatggtacggttaatttcacgtgcgaaaactgacgaatacacacatgtctagttttaaaggaataaaa 229  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||    
T  33506857 atgagcaatgctatatggtacggttaatttcacgtacgaaaactgacgaatgcacacatgtttagttttaaaggaataaaa 33506937  T

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Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 25943505 - 25943427
Alignment:
Q  151 gagcaatgctatatggtacggttaatttcacgtgcgaaaactgacgaatacacacatgtctagttttaaaggaataaaa 229  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  25943505 gagcaatgctatatggtacggttaatttcacgtacgaaaactgacgaatgcacaaatgtctagttttaaaggaataaaa 25943427  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 13150432 - 13150510
Alignment:
Q  151 gagcaatgctatatggtacggttaatttcacgtgcgaaaactgacgaatacacacatgtctagttttaaaggaataaaa 229  Q
    ||||||||||||||| |||| ||||||||||||  |||||||||||||| |||| ||||||||||||||||||||||||    
T  13150432 gagcaatgctatatgttacgattaatttcacgtatgaaaactgacgaatgcacaaatgtctagttttaaaggaataaaa 13150510  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 13002350 - 13002430
Alignment:
Q  149 atgagcaatgctatatggtacggttaatttcacgtgcgaaaactgacgaatacacacatgtctagttttaaaggaataaaa 229  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  13002350 atgagcaatgctatatggtacgattaatttcacgtacgaaaactgacgaatgcacaaatgtctagttttaaaggaataaaa 13002430  T

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