View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518_low_3 (Length: 404)
Name: NF8518_low_3
Description: NF8518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 388
Target Start/End: Original strand, 43476718 - 43477118
Alignment:
| Q |
10 |
gattttgctttgtttcttatgaccacttcccatgatcttgttcatttttacatgtttgttaaaagtaacgatgttaacaggattgatgagttctttc--- |
106 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43476718 |
gattttgctttgtttcttaggaccacttcccatgatcttgttcatttttacatgtttgttaaaagtaacgatgttaacagaattgatgagttctttcaaa |
43476817 |
T |
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| Q |
107 |
------------nnnnnnncaggattgatgagttgaa-------agtacagttagctaaatagacataacttgtccaactttccaaatatattttggaaa |
187 |
Q |
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|||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43476818 |
aaaaaaaaaaaaaaaaaaacaggattgatgagttgaaacttgaaagtagagttggctaaatagacataacttgtccaactttccaaatatattttggaaa |
43476917 |
T |
|
| Q |
188 |
tttctccaaaactctagccttatttgctctttatcttctctcttcttctatatgtgaacaggtaaatcgtgttactatacttgctatttgtattaagcca |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43476918 |
tttctccaaaactctagccttatttgctctttatcttcactcttcttctatatgtgaacaggtaaatcgtgttactatacttgctatttgtattaagcca |
43477017 |
T |
|
| Q |
288 |
atttgatatacaaatccaatttagtaaaaaagtcaaaactacttagaaaggaaattactctgctggtaagacaatttataactgcaaatggtattagtgc |
387 |
Q |
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| T |
43477018 |
atttgatatacaaatccaatttagtaaaaaagtcaaaactacttagaaaggaaattactctgctggtaaaacaatttataactgcaaatggtattagtgc |
43477117 |
T |
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| Q |
388 |
a |
388 |
Q |
| |
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| |
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| T |
43477118 |
a |
43477118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 12729176 - 12729146
Alignment:
| Q |
163 |
caactttccaaatatattttggaaatttctc |
193 |
Q |
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| T |
12729176 |
caactttccaaatatattttggaaatttctc |
12729146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 23686060 - 23686030
Alignment:
| Q |
163 |
caactttccaaatatattttggaaatttctc |
193 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23686060 |
caactttccaaatatattttggaaatttctc |
23686030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 24058297 - 24058267
Alignment:
| Q |
163 |
caactttccaaatatattttggaaatttctc |
193 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
24058297 |
caactttccaaatatattttggaaatttctc |
24058267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 52653559 - 52653529
Alignment:
| Q |
163 |
caactttccaaatatattttggaaatttctc |
193 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
52653559 |
caactttccaaatatattttggaaatttctc |
52653529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 49053590 - 49053560
Alignment:
| Q |
163 |
caactttccaaatatattttggaaatttctc |
193 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
49053590 |
caactttccaaatatattttggaaatttctc |
49053560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 49061170 - 49061140
Alignment:
| Q |
163 |
caactttccaaatatattttggaaatttctc |
193 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
49061170 |
caactttccaaatatattttggaaatttctc |
49061140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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