View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518_low_6 (Length: 331)
Name: NF8518_low_6
Description: NF8518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 56045271 - 56045570
Alignment:
| Q |
14 |
ttctcatggatttgctacgcatggccgcataatatcacagcacaacaaattggatcaggttaccatggacttggaattggtgcattcacacttgattggg |
113 |
Q |
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| T |
56045271 |
ttctcatggatttgctacgcatggccacataatatcacagcacaacaaattggatcaggttaccatggacttggaattggtgcattcacacttgattggg |
56045370 |
T |
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| Q |
114 |
ctggaatttcagcttatcatggaagcccacttgttgcaccgtggacttccattgttaatgttggggttggatttatcatgttcatctatataattctacc |
213 |
Q |
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| T |
56045371 |
ctggaatttcagcttatcatggaagcccacttgttgcaccgtggacttccattgttaatgttggggttggatttatcatgttcatctatataattctacc |
56045470 |
T |
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| Q |
214 |
cgtatgttactggaggtttaacacttttgatgctaggaagtttcctatattctctaatcagttgttcacgtcaagtggacacaagtatgacacgacaaag |
313 |
Q |
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| T |
56045471 |
cgtatgttactggaggtttaacacttttgatgctaggaagtttcctatattctctaatcagttgttcacgtcaagtggacacaagtatgacacgacaaag |
56045570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 98 - 294
Target Start/End: Original strand, 55706814 - 55707012
Alignment:
| Q |
98 |
ttcacacttgattgggctggaatttcagcttatcatggaagcccacttgttgcaccgtggacttccattgttaatgttggggttggatttatcatgttca |
197 |
Q |
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| T |
55706814 |
ttcacacttgactgcgcttggatttcagcttatcatggaagccctcttgttacaccgtggtcttccactgttaatgtttgggttggatttatcttgttca |
55706913 |
T |
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| Q |
198 |
tctatataattctacccgt-atgttactggaggtttaaca-cttttgatgctaggaagtttcctatattctctaatcagttgttcacgtcaagtggaca |
294 |
Q |
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| T |
55706914 |
tctatataattctatctataatgttagtggaagtttaacaccttttgatgctaggaagtttcctatactttctaatcagttgttcacatccagtggaca |
55707012 |
T |
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