View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518_low_7 (Length: 318)
Name: NF8518_low_7
Description: NF8518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 39544637 - 39544887
Alignment:
| Q |
3 |
acactggtgattgacttgttactttggagctttttctgaaacttgttttcgggtaagtagggtttgattcaccaatataaaggttattattttcattcac |
102 |
Q |
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| T |
39544637 |
acactggtgattgacttgttactttggagctttttctgaaacttgtttttgggtaagtagggtttgattcaccaatataaaggttgttattttcattcac |
39544736 |
T |
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| Q |
103 |
gtcaatatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaattgaagaagaaaagcaagtaaa |
202 |
Q |
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| T |
39544737 |
gtcaatatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaattgaagaagaaaagcaagtaaa |
39544836 |
T |
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| Q |
203 |
atgatagtgtgttgaactgccgttggagagagagttgataattgtgtttgt |
253 |
Q |
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| T |
39544837 |
atgatagtgtgttgaactgccattggagagagagttgataattgtgtttgt |
39544887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 302
Target Start/End: Original strand, 39581037 - 39581334
Alignment:
| Q |
10 |
tgattgacttgttactttggagctttttctgaaacttgttttcgggtaagtagggtttgattcaccaatataaaggttattattttcattcacgtcaata |
109 |
Q |
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| T |
39581037 |
tgattgacttgttactttggagcttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaacgttgttactttcagtaacatcaaaa |
39581136 |
T |
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| Q |
110 |
tctgatccgcaattgatgaagtatgtgtcttggtgatcgtat---ccgagtgagggaaattgtaatgatgcgaattgaagaagaaaagcaagtaaaatga |
206 |
Q |
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| T |
39581137 |
tctgatccgcaattgatgaagtatgtgtgttggggattatataatccgagcgaggaaaattgtaatgatgagaattgaagaagaaaagttagtagaacga |
39581236 |
T |
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| Q |
207 |
tagtgtgttgaactgccgttggagagagagttgataattgtgtttgtttaaatgatttt---ttaagctatgatgattgaaattcttaaaagttagtag |
302 |
Q |
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| T |
39581237 |
tagactgttgaattgccatggg-gagagagttgataattgtgtttgtttgaatgatttttttttaagctgtgatgactgctattcatagaagttagtag |
39581334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 39521842 - 39522042
Alignment:
| Q |
1 |
agacactggtgattgacttgttactttggag---ctttttctgaaacttgttttcgggtaagtagggtttgattcaccaatataaaggttattattttca |
97 |
Q |
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| T |
39521842 |
agacactggtgattgacttgttactttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataaaggttgttattttca |
39521941 |
T |
|
| Q |
98 |
ttcacgtcaatatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaattgaagaagaaaagcaa |
197 |
Q |
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| T |
39521942 |
ttcacgtcgatatctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaagaaaaaaagcaa |
39522041 |
T |
|
| Q |
198 |
g |
198 |
Q |
| |
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| T |
39522042 |
g |
39522042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 48 - 280
Target Start/End: Original strand, 39576537 - 39576768
Alignment:
| Q |
48 |
ttttcgggtaagtagggtttgattcaccaatataaaggttattattttcattcacgtcaatatctgatccgcaattgatgaagtatgtgtcttggtgatc |
147 |
Q |
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|||| ||||||| | |||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
39576537 |
ttttagggtaagcatggtttgattcaccaatataaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgtctcttgatgatc |
39576636 |
T |
|
| Q |
148 |
gtatccgagtgagggaaattgtaatgatgcgaatt---gaagaagaaaagcaagtaaaatgatagtgtgttgaactgccgttggagagagagttgataat |
244 |
Q |
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| T |
39576637 |
gtatccgagtgcagggaagtgtagtgatgagaattgaagaagaagaaaagccagtaaaatgatagagtgttgaattgccattgg-gagagag--gaaagt |
39576733 |
T |
|
| Q |
245 |
tgtgtttgtttaaatgattttttaagctatgatgat |
280 |
Q |
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| T |
39576734 |
tttgtttggtt-gatgattttttaagctatgatgat |
39576768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 280
Target Start/End: Original strand, 39525342 - 39525620
Alignment:
| Q |
4 |
cactggtgattgacttgttactttggagctttttctgaaacttgttttcgggtaagtagggtttgattcaccaatataaaggttattattttcattcacg |
103 |
Q |
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||||| ||||||||| ||| || |||||||||| |||||||||||||| ||||| | ||||||||||| |||||||||| |||||| ||||| | || |
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| T |
39525342 |
cactgatgattgactggtttctatggagcttttgctgaaacttgttttagggtagttggggtttgattccccaatataaactttattactttcagtaaca |
39525441 |
T |
|
| Q |
104 |
tcaa------tatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaattgaagaagaaaagcaa |
197 |
Q |
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| T |
39525442 |
gtaacgttgctatctgatccacaactgatgaagtatatgtcttgttcatcgtatccgagcgaggggaagtataatgatgagaattgaataagaaaagcaa |
39525541 |
T |
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| Q |
198 |
gtaaaatgatagtgtgttgaactgccgttggagagagagttgataattgtgtttgtttaaatgattttttaagctatgatgat |
280 |
Q |
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| T |
39525542 |
gtaagatgatagagtgttgaattgccat---ggagagagttgaaaattatgtttgttt-gatgattttttaagctatgatgat |
39525620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 39571561 - 39571612
Alignment:
| Q |
248 |
gtttgtttaaatgattttttaagctatgatgattgaaattcttaaaagttag |
299 |
Q |
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| T |
39571561 |
gtttgtttaaatgattttttaagctatgatgattgaaattcttaaaagttag |
39571612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 269
Target Start/End: Original strand, 39581848 - 39582005
Alignment:
| Q |
107 |
atatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaattgaagaagaaaagcaagtaaaatga |
206 |
Q |
| |
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|||||| |||| ||| ||||||||||| ||||||||| ||||||||| ||||||| || |||||||||| ||||||||| ||| | |||||||| |
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| T |
39581848 |
atatcttatccacaactgatgaagtatatgtcttggtcatcgtatccaagtgaggcgaactgtaatgatgagaattgaag----aaaattactaaaatga |
39581943 |
T |
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| Q |
207 |
tagtgtgttgaactgccgttggagagagagttgataattgtgtttgtttaaatgattttttaa |
269 |
Q |
| |
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| T |
39581944 |
tacagtgttgaattgccgttggggagagaattca-aattgtgtttgtttgaatgatcttttaa |
39582005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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