View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518_low_8 (Length: 300)
Name: NF8518_low_8
Description: NF8518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 298
Target Start/End: Complemental strand, 62335 - 62052
Alignment:
| Q |
15 |
gaaacatgatgtataatgaatgtccttgtaaaaatctttaagcatgaactcatttctattgtctgatctattgtatttgactttagcattaaattgagta |
114 |
Q |
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| T |
62335 |
gaaacatgatgtataatgaatgttcttgtaaaaatctttaagcatgaactcatttctattgtctgatcttatgtatttgactttagcattaaattgagta |
62236 |
T |
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| Q |
115 |
ttcaatattgaaacaaaagacttatatgagtggatgtttatgattttaatctactgagatatattcaagtgaacttacttttgtcatcaacgaccttgtt |
214 |
Q |
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| T |
62235 |
ttcaatattgaaacaaaagacttatatgagtggatgtttatgattttaatctaatgagatatattcaagtgaacttacttttgtcatcaacgaccttgtt |
62136 |
T |
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| Q |
215 |
tcattatatgccactttggaaaaagtagtttatatataatactagtattttatttttctatcataccttctactctctgctcct |
298 |
Q |
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| T |
62135 |
tcattatatgccactttggaaaaagtagtttatatataatactagtattttatttttctatcataccttctactcactgttcct |
62052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 111626 - 111481
Alignment:
| Q |
54 |
aagcatgaactcatttctattgtctgatctattgtatttgactttagcattaaattgagtattc----aatattgaaacaaaagacttatatgagtggat |
149 |
Q |
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| T |
111626 |
aagcatgaattcatttctattgtctgatcta-tgcatttgacttgagcattaaattgagtattcaccaaccattgaaacagaagacttacaagagtggat |
111528 |
T |
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| Q |
150 |
gtttatgattttaatctactgagatatattcaagtgaacttactttt |
196 |
Q |
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| T |
111527 |
gtttctgattttaatctaatgacatatattcaagtgagtttactttt |
111481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 111702 - 111643
Alignment:
| Q |
15 |
gaaacatgatgtataatgaatgtccttgtaaaaatctttaagcatgaactcatttctatt |
74 |
Q |
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| T |
111702 |
gaaacatgatgtataatgaacgcccttgtaaaaatctttaagcatgaattcatttttatt |
111643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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