View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8519_high_2 (Length: 412)
Name: NF8519_high_2
Description: NF8519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8519_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 23 - 397
Target Start/End: Original strand, 29814743 - 29815118
Alignment:
| Q |
23 |
ttgtttgatatgtgctgaatttggttacttctgtagtgtcatatttcacgcgcacggtagcgcgtgattagtttgttttaaataatcatcaagctccttt |
122 |
Q |
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| T |
29814743 |
ttgtttgatatgtgctgaatttggttacttctgtagtgtcacatttcacgtgcacggtagcacgtgattagtttgttttaaataatcatcaagctccttt |
29814842 |
T |
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| Q |
123 |
gtcttacatgctgtttggtggattaaatccgcatgcagccagtcgaaattttttgaccgtttgattgatatcagacgatctctatatgctcatggattta |
222 |
Q |
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| T |
29814843 |
gtcttacatgctgtttggtggattaaaaccgcatgcagccagtcgaaattttttgaccgtttgattgatatcagacgatctctatgtgctcatgtattta |
29814942 |
T |
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| Q |
223 |
tttaaattgacatcaaggataatcgaacgtgagaccttgagtatgagcata--cttaggtctcaatccaatgccatcaaaccaattcaaatggtttaact |
320 |
Q |
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| T |
29814943 |
cttaaattgacatcgagcataatcgaacgtgagaccttgagtatgaacatattcttaggtctcaatccaatgccatcaaaccaattcaagtggtttaact |
29815042 |
T |
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| Q |
321 |
ttttattatctaagttgtacttatggatcattttacatacattgatcaaagagcatataatatttactcattatttt |
397 |
Q |
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| T |
29815043 |
ttttattatcaaagttgtatttatggatcattttacatacattgatcaaagagcatataatatttact-attatttt |
29815118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 24907582 - 24907532
Alignment:
| Q |
225 |
taaattgacatcaaggataatcgaacgtgagaccttgagtatgagcatact |
275 |
Q |
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| T |
24907582 |
taaattggcatcaaggataatcgaacctgagaacttgaggaggagcatact |
24907532 |
T |
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