View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8519_high_3 (Length: 404)
Name: NF8519_high_3
Description: NF8519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8519_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 160 - 389
Target Start/End: Original strand, 32604488 - 32604717
Alignment:
| Q |
160 |
attaaaattaaatattaaagactaatttcattttgtctgattctaatctctatcaataattcaacatcattgaaagagacacaaaaagaggaagaaaatg |
259 |
Q |
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| T |
32604488 |
attaaaattaaatattaaagactaatttcattttgtccgattctaatctctatcaataattcaacatcattgaaagagacacaaaaagaggaagaaaatg |
32604587 |
T |
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| Q |
260 |
atcgaggaaggtacctttcgagcacaagagcgaaaggagtaattataattgcggccacaacatgacggtacacggagagaatccaatggctcataccatg |
359 |
Q |
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| T |
32604588 |
atcgaggaaggtacctttcgagcacaagagcgaaaggagtaattataattgcggccacaacatgacggtacacggagagaatccaatggctcataccatg |
32604687 |
T |
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| Q |
360 |
tttgaaagaaaccatagtaatgatgtacat |
389 |
Q |
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| T |
32604688 |
tttgaaagaaaccatagtaatgatgtacat |
32604717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 32604343 - 32604430
Alignment:
| Q |
15 |
tcatctttggccttgtttttctgtaaagataaataattaaaacaaaatcttgttaagcttatgaagacaaagtatatagtagctacac |
102 |
Q |
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| T |
32604343 |
tcatctttggccttgtttttctgtaaagataaataattaaaacaaaatcttgttaagcttatgaagacaaagtatatagtagctacac |
32604430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 10605241 - 10605312
Alignment:
| Q |
318 |
aacatgacggtacacggagagaatccaatggctcataccatgtttgaaagaaaccatagtaatgatgtacat |
389 |
Q |
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| T |
10605241 |
aacatgacggtacacagagagtacccaatgactcatgccatgcttgaatgaaaccatagtgatgatgtacat |
10605312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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