View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8519_high_5 (Length: 350)

Name: NF8519_high_5

Description: NF8519

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF8519_high_5

[»] chr8 (1 HSPs)

Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 213; E-Value: 1e-117

Query Start/End: Original strand, 35 - 334

Target Start/End: Complemental strand, 27480921 - 27480623

Alignment:

Q	35	atatataaaataacagagaactagtagatggtttggtacactcctatctcaaatggttagtatttgaaccacatatatttcttttcattatgttgttttg	134	Q
		\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27480921	atataaaaaataaaagagaactagtagatggtttg-tactctcctatctcaaatggttagtatttgaaccttaataatttcttttcattatgttgttttg	27480823	T

Q	135	tttgaagtgtannnnnnnnnnnnngttagatgcagatgaataggcggttttatatgttgaaatggtttcaggagaagcatgccactcctgttttaataaa	234	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27480822	tttgaagtgtattttttcttttttgttagatgcagatgaagaggcggttttatatgctgaaatggtttcaggagaagcatgccactcctgttttaataaa	27480723	T

Q	235	ttctaaggtatttttatcacgcaatgtgtgttttatttatgtatcaggttgtctctaagactatcagattttctatttctgcatttgttaagcttctctg	334	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27480722	ttctaaggtatttttatcacgcaatgtgtgttttatttatgtatcaggttgtctctaagactatcagattttctatttctgcatttgttaagcttctctg	27480623	T

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