View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8519_low_1 (Length: 495)
Name: NF8519_low_1
Description: NF8519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8519_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 7 - 476
Target Start/End: Original strand, 8757487 - 8757956
Alignment:
| Q |
7 |
atggtgttgatggagattactgctgtggctgagaaagatgctgaattgaggaaatctgcattcaagcctaattctcctgcctgcaaagcagttgttgatc |
106 |
Q |
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| T |
8757487 |
atggcgttgatggagattactgctgtggctgagaaagatgctgaattgaggaaatctgcattcaagcctaattctcctgcctgcaaagcagttgttgatc |
8757586 |
T |
|
| Q |
107 |
aagtgcttaagataattgagaaagcagattcagatcttctcataccgtgtgtcaaggcgattgggaatttggcaaggacattcaaggctaccgagacaag |
206 |
Q |
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| T |
8757587 |
aagtgcttaagataattgagaaagcagattcagatcttctcataccgtgtgtcaaggcgattgggaatttggcaaggacattcaaggctaccgagacaag |
8757686 |
T |
|
| Q |
207 |
gatgatcggtccattggtaaaacttcttgatgaaagagaggcagaggtttcaagggaggcgtcaatcgcgcttaggaaattcgctggtagtgaaaactac |
306 |
Q |
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| T |
8757687 |
gatgatcggtccattggtaaaacttcttgatgaaagagaggcagaggtttcaagggaggcgtcaatcgcgcttaggaaattcgccggcagtgaaaactac |
8757786 |
T |
|
| Q |
307 |
cttcatgttgatcactccaaggcaattatcagtgcaggtggggcaaaacacttgattcagcttgtatattttggagaacaaatggttcagattccagcat |
406 |
Q |
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| T |
8757787 |
cttcatgttgatcactccaacgcaattatcagtgcaggtggggcaaaacacttgattcagcttgtatattttggagaacaaatggttcagattccagcat |
8757886 |
T |
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| Q |
407 |
tggttctgctctcttacattgcattgcacgtgccggatagcgaggaacttgctctggctgaggtgctagg |
476 |
Q |
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| T |
8757887 |
tggttctgctctcttacattgcattgcatgtgccggatagcgaggaacttgctctggctgaggtgctagg |
8757956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 32030963 - 32030734
Alignment:
| Q |
19 |
gagattactgctgtggctgagaaagatgctgaattgaggaaatctgcattcaagcctaattctcctgcctgcaaagcagttgttgatcaagtgcttaaga |
118 |
Q |
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||||||||||| ||||||||||||||| |||||||||| | ||| || || ||||| || | ||||| || ||||| ||||||||||||||| || | | |
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| T |
32030963 |
gagattactgcagtggctgagaaagatcctgaattgagaagatcggcgtttaagccaaacacccctgcttgtaaagcggttgttgatcaagtgattgata |
32030864 |
T |
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| Q |
119 |
taattgagaaagcagattcaga-tcttctcataccgtgtgtcaaggcgattgggaatttggcaaggacattcaaggctaccgagacaaggatgatcggtc |
217 |
Q |
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| T |
32030863 |
ttattgacaaagaaga-taagagacttttgattccttgtatcaaggttattgggagtttggctaggacattcagggcaactgagacaaggataattggtc |
32030765 |
T |
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| Q |
218 |
cattggtaaaacttcttgatgaaagagaggc |
248 |
Q |
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| T |
32030764 |
cgttggttcgacttcttgacgaaagagaggc |
32030734 |
T |
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