View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8519_low_10 (Length: 334)
Name: NF8519_low_10
Description: NF8519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8519_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 30338539 - 30338769
Alignment:
| Q |
1 |
agagcatgtgggttgtttgtttatgttcttcttcttctctgattgctatcaattaccccagctgatcaattgctatcaattattatcctcaggtcatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30338539 |
agagcatgtgggttgtttgtttatgttcttcttcttctctgattgctatcaattaccccagctgatcaattgctatcaattattatcctcaggtaatttt |
30338638 |
T |
|
| Q |
101 |
tcttctgaaaacaaacaactgatcaattgagtttgtttctgtttctttgttttcttctcctattgggttgttgtattgaattttagagggttgaattttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30338639 |
tcttctgaaaacaaacaactgatcaattgagtttgtctctgtttctttgttttcttctcctattgggttgttgtattgaattttagagggttgaattttc |
30338738 |
T |
|
| Q |
201 |
ttgatttcatttttgatcaactgaggttgca |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
30338739 |
ttgatttcatttttgatcaactgaggttgca |
30338769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 26164676 - 26164576
Alignment:
| Q |
133 |
ttgtttctgtttctttgtt-ttcttctcctattgggttgttgtattgaattttagagggttgaa-ttttcttgatttcatttttgatcaactgaggttgc |
230 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| || |||||| |
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| T |
26164676 |
ttgtttctgtttctttgttcttcttctcccattgggttgttgtattgaaggttagagggttgaatttttcttgatttcatttttgatcaattgtggttgc |
26164577 |
T |
|
| Q |
231 |
a |
231 |
Q |
| |
|
| |
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|
| T |
26164576 |
a |
26164576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 18989934 - 18989705
Alignment:
| Q |
1 |
agagcatgtgggttgtttgtttatgttcttcttcttctctgattgctatcaattaccccagctgatcaattgctatcaattattatcctcaggtcatttt |
100 |
Q |
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|
|||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
18989934 |
agagcatgtgggttgtttgtgtctgttcttcttcttctccgattgctatcaattaccccaactgatcaattgctatcaattattatcctcaggtaatttt |
18989835 |
T |
|
| Q |
101 |
tcttctgaaaacaaacaactgatcaattgagtttgtttctgtttctttgttttcttctcctattgggttgttgtattgaattttagagggttgaattttc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
18989834 |
tcttctgaaaacaaacaactgatcaattgagtttgtttctgtttctatgttttcttctcctattgggttgttgtattgaatgttagagggttgaattttc |
18989735 |
T |
|
| Q |
201 |
ttgatttcatttttgatcaactgaggttgc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
18989734 |
ttgatttcatttttgatcaactgaggttgc |
18989705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 23915588 - 23915817
Alignment:
| Q |
1 |
agagcatgtgggttgtttgtttatgttcttcttcttctctgattgctatcaattaccccagctgatcaattgctatcaattattatcctcaggtcatttt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
23915588 |
agagcatgtgggttgtttgtttctgttcttcttcttctccgattgctatcaattaccccaactgatcaattgctatcaattattatcctcaggtaatttt |
23915687 |
T |
|
| Q |
101 |
tcttctgaaaacaaacaactgatcaattgagtttgtttctgtttctttgttttcttctcctattgggttgttgtattgaattttagagggttgaattttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23915688 |
tcttctgaaaacaaacaactgatcaattgagtttgtttctgtttctatgtttccttctcctattgggttgttgtattgaatgttagagggttgaattttc |
23915787 |
T |
|
| Q |
201 |
ttgatttcatttttgatcaactgaggttgc |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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|
| T |
23915788 |
ttgatttcatttttgatcaactgaggttgc |
23915817 |
T |
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