View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8519_low_2 (Length: 489)

Name: NF8519_low_2
Description: NF8519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8519_low_2
NF8519_low_2
[»] chr5 (2 HSPs)
chr5 (13-329)||(33049663-33049978)
chr5 (180-472)||(9504236-9504528)
[»] chr1 (2 HSPs)
chr1 (13-295)||(28452357-28452639)
chr1 (429-473)||(28452175-28452219)
[»] chr2 (4 HSPs)
chr2 (258-472)||(45496307-45496521)
chr2 (258-472)||(45504049-45504263)
chr2 (258-472)||(21793744-21793958)
chr2 (258-472)||(5984098-5984312)
[»] scaffold0014 (1 HSPs)
scaffold0014 (321-448)||(61808-61934)
[»] chr4 (2 HSPs)
chr4 (255-472)||(16847122-16847339)
chr4 (13-118)||(11355747-11355852)


Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 33049663 - 33049978
Alignment:
Q  13 agatgaaggtaatcttcatataccaatatgttcttgatgttgtgaacgatattataccaacacttgcaagaaacacaactgaggttcaacaaactgcaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33049663 agatgaaggtaatcttcatataccaatatgttcttgatgttgtgaacgatattataccaacacttgcaagaaacgcaactgaggttcaacaaactgcaaa 33049762  T
Q  113 caaagatacgaagaagaaacatggaaatgcaatgtttctcattcactagtgtgtgaatagtgatatttttgagaagattatgcgttgtgaaaatgcgaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33049763 caaagatacgaagaagaaacatggaaatgcaatgtttctcattcactagtgtgtgaatagtgatatttttgagaagattatgcgttgtgaaaatgcgaaa 33049862  T
Q  213 gaaacttgagatacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatgg 312  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33049863 gaaacttgagatacacttgagagattgtattatggatataaaaaattgaagaaagtgaggcttcaagcattaagaaaacaatacgagatg-tgaatatgg 33049961  T
Q  313 aggaaggtgaatatgtg 329  Q
    |||| ||||||||||||    
T  33049962 aggatggtgaatatgtg 33049978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 180 - 472
Target Start/End: Original strand, 9504236 - 9504528
Alignment:
Q  180 tttgagaagattatgcgttgtgaaaatgcgaaagaaacttgagatacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaag 279  Q
    ||||||||||| |||| || |||||  | ||| || || || |||||| | |||| ||||||||||||  |||  || |||||||| ||||| ||||||     
T  9504236 tttgagaagatcatgcattatgaaagcgtgaaggagacatgggatacattagagaaattgtattatggtgatggtaagttgaagaaggtgagacttcaac 9504335  T
Q  280 cattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatctagcaaatcagatgataagaaa 379  Q
    | || |||| ||| || ||  || |||  ||||| ||||  |||| ||| |||||||||||||||||  || | |||||  |||||||||||| ||| ||    
T  9504336 ctttgagaagacagtatgaagtgttgacaatggaagaagaagaatctgttagtcaatactttgataaggtgatcaatcttacaaatcagatgacaaggaa 9504435  T
Q  380 taatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgtggtcttagaagaatc 472  Q
    |  ||| ||  |||||||  |||||||| | ||||||||||||| ||  || ||| ||||||||||||| ||||| |||| | |||| |||||    
T  9504436 tggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcaaaaccttaacatcaagatttgatcacattgtagtggccctagaggaatc 9504528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 28452639 - 28452357
Alignment:
Q  13 agatgaaggtaatcttcatataccaatatgttcttgatgttgtgaacgatattataccaacacttgcaagaaacacaactgaggttcaacaaactgcaaa 112  Q
    ||||||||||||| |||   || ||| |||||||||||| || ||| |||  | ||||||  ||||||||||||||||| ||||||||||||| || | |    
T  28452639 agatgaaggtaatattccggtatcaagatgttcttgatgctgcgaaggatggtctaccaatgcttgcaagaaacacaacagaggttcaacaaattggaca 28452540  T
Q  113 caaagatacgaagaagaaacatggaaatgcaatgtttctcattcactagtgtgtgaatagtgatatttttgagaagattatgcgttgtgaaaatgcgaaa 212  Q
     |||||| ||||||| ||| |||| ||  |||||||||||||||||||  |||| |||  ||| ||||| |||||||| ||||  ||||||||||||||     
T  28452539 taaagatgcgaagaaaaaagatgggaaatcaatgtttctcattcactatggtgttaatgatgagattttggagaagatcatgcactgtgaaaatgcgaag 28452440  T
Q  213 gaaacttgagatacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaagcattaagaaaacaata 295  Q
    ||||||||||||||  || |||| ||||||| |||| ||| ||| |||||||| ||| | |||||||||||||| | ||||||    
T  28452439 gaaacttgagatactattaagaggttgtattctggagatggaaagttgaagaaggtgggacttcaagcattaaggagacaata 28452357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 429 - 473
Target Start/End: Complemental strand, 28452219 - 28452175
Alignment:
Q  429 ttgacaccaagatttgatcatattgttgtggtcttagaagaatcc 473  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||    
T  28452219 ttgacaccaaggtttgatcatattgttgtagtcttagaagaatcc 28452175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 472
Target Start/End: Complemental strand, 45496521 - 45496307
Alignment:
Q  258 ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc 357  Q
    |||||||| ||||| |||||||| || |||| ||| || ||  || |||  ||||| ||||  |||||||| |||||||||||||||||  || | ||||    
T  45496521 ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatatgttagtcaatactttgataaggtgatcaatc 45496422  T
Q  358 tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt 457  Q
    || |||||||||||||||| |||  ||| ||  |||||||  |||||||| | ||||||||||||||||  || ||| ||||||||||||| ||||| ||    
T  45496421 taacaaatcagatgataaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatcacattgtagt 45496322  T
Q  458 ggtcttagaagaatc 472  Q
    || | |||| |||||    
T  45496321 ggccctagaggaatc 45496307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 472
Target Start/End: Complemental strand, 45504263 - 45504049
Alignment:
Q  258 ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc 357  Q
    |||||||| ||||| |||||||| || |||| ||| || ||  || |||  ||||| ||||  |||||||| |||||||||||||||||  || | ||||    
T  45504263 ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatatgttagtcaatactttgataaggtgatcaatc 45504164  T
Q  358 tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt 457  Q
    || |||||||||||||||| |||  ||| ||  |||||||  |||||||| | ||||||||||||||||  || ||| ||||||||||||| ||||| ||    
T  45504163 taacaaatcagatgataaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatcacattgtagt 45504064  T
Q  458 ggtcttagaagaatc 472  Q
    || | |||| |||||    
T  45504063 ggccctagaggaatc 45504049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 258 - 472
Target Start/End: Complemental strand, 21793958 - 21793744
Alignment:
Q  258 ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc 357  Q
    |||||||| ||||| |||||||| || |||| ||| || ||  || |||  ||||| ||||  |||| ||| |||||||||||||||||  || | ||||    
T  21793958 ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatttgttagtcaatactttgataaggtgatcaatc 21793859  T
Q  358 tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt 457  Q
    |  |||||||||||| ||| |||  ||| ||  |||||||  |||||||| | ||||||||||||||||  || ||| ||||||||||||| ||||| ||    
T  21793858 ttacaaatcagatgacaaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatcacattgtagt 21793759  T
Q  458 ggtcttagaagaatc 472  Q
    || | |||| |||||    
T  21793758 ggccctagaggaatc 21793744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 258 - 472
Target Start/End: Original strand, 5984098 - 5984312
Alignment:
Q  258 ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc 357  Q
    |||||||| ||||| |||||||| || |||| ||| || ||  || |||  ||||| ||||  |||| ||| |||||||||||||||||  || | ||||    
T  5984098 ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatctgttagtcaatactttgataaggtgctcaatc 5984197  T
Q  358 tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgttgt 457  Q
    |  |||||||||||| ||| |||| ||| ||  |||||||  |||||||| | ||||| ||||||| ||  || ||| ||||||||||||| ||||| ||    
T  5984198 ttacaaatcagatgacaaggaatagtgaaactgtcactgatgtgatgaaggtggaaaaagttctcataaccttaacatcaagatttgatcacattgtagt 5984297  T
Q  458 ggtcttagaagaatc 472  Q
    || | |||| |||||    
T  5984298 ggccctagaggaatc 5984312  T

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Target: scaffold0014 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 321 - 448
Target Start/End: Original strand, 61808 - 61934
Alignment:
Q  321 gaatatgtgagtcaatactttgataaactggtgaatctagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttc 420  Q
    |||||||| |||||||||||||||||  || | |||||  |||||||||||| ||| |||  ||| || ||||||||  |||||||| | ||||||||||    
T  61808 gaatatgttagtcaatactttgataaggtg-tcaatcttacaaatcagatgacaaggaatggtgaaactatcactgatgtgatgaaggtggaaaaggttc 61906  T
Q  421 tcagaattttgacaccaagatttgatca 448  Q
    |||||||  ||||| |||||||||||||    
T  61907 tcagaatcgtgacatcaagatttgatca 61934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 472
Target Start/End: Complemental strand, 16847339 - 16847122
Alignment:
Q  255 aaattgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtga 354  Q
    ||||||||||| ||||| || ||||| || |||| ||| || ||  || |||  ||||| ||||  |||| ||| |||||||||||||||||  || | |    
T  16847339 aaattgaagaaggtgagactgcaagctttgagaagacattatgaagtgttgacaatggaagaagaagaatttgttagtcaatactttgataaggtgatca 16847240  T
Q  355 atctagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatcatattgt 454  Q
    ||||  |||||||||||| ||| |||  ||| ||  |||||||  |||||||| | ||||||||||||||||  || ||| ||| ||||||||| |||||    
T  16847239 atcttacaaatcagatgacaaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaaaatttgatcacattgt 16847140  T
Q  455 tgtggtcttagaagaatc 472  Q
     |||| | |||| |||||    
T  16847139 agtggccctagaggaatc 16847122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 11355852 - 11355747
Alignment:
Q  13 agatgaaggtaatcttcatataccaatatgttcttgatgttgtgaacgatattataccaacacttgcaagaaacacaactgaggttcaacaaactgcaaa 112  Q
    ||||| |||| ||||||| ||||||| |||||||||| ||||| || |||    ||||| || | ||||||||| ||||||| ||  ||||| |||||||    
T  11355852 agatggaggtgatcttcagataccaagatgttcttgaagttgttaatgatggggtaccagcattggcaagaaacgcaactgatgtgaaacaagctgcaaa 11355753  T
Q  113 caaaga 118  Q
    ||||||    
T  11355752 caaaga 11355747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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