View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8519_low_20 (Length: 224)
Name: NF8519_low_20
Description: NF8519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8519_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 32309633 - 32309839
Alignment:
| Q |
3 |
ggatgtgatgattccttgctattggaggacaatggtgatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaag |
102 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309633 |
ggatgtgatgcttccttgctattggaagacaatggtgatagaaatggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaag |
32309732 |
T |
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| Q |
103 |
ttgacttgatcaaggaggaggtggaacaagcatgtcccggcgttgtatcttgtgctgacatacttgctcttgccgcaagagattccgttcttttggtttg |
202 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309733 |
ttgacttgattaaggaggaggtggaacaagcatgtcccggcgttgtgtcttgtgctgatatacttgctcttgccgcaagagattccgttcttttggtttg |
32309832 |
T |
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| Q |
203 |
ttcctaa |
209 |
Q |
| |
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||||||| |
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| T |
32309833 |
ttcctaa |
32309839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 32814824 - 32814619
Alignment:
| Q |
3 |
ggatgtgatgattccttgctattggaggacaatggtgatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaag |
102 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32814824 |
ggatgtgatgcttccttgctattggaagacaatggtgatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaag |
32814725 |
T |
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| Q |
103 |
ttgacttgatcaaggaggaggtggaacaagcatgtcccggcgttgtatcttgtgctgacatacttgctcttgccgcaagagattccgttcttttggtttg |
202 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32814724 |
ttgacttgatcaaggaagaggtggagcaagcatgtcccggcgttgtttcttgtgctgacatacttgctcttgccgtaagagattccgttcttttggtttg |
32814625 |
T |
|
| Q |
203 |
ttccta |
208 |
Q |
| |
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|||||| |
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| T |
32814624 |
ttccta |
32814619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 32565198 - 32564997
Alignment:
| Q |
6 |
tgtgatgattccttgctattggaggacaatggtgatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaagttg |
105 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32565198 |
tgtgatgcttccttgctattggaagacaatggtgatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaagttg |
32565099 |
T |
|
| Q |
106 |
acttgatcaaggaggaggtggaacaagcatgtcccggcgttgtatcttgtgctgacatacttgctcttgccgcaagagattccgttcttttggtttgttc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32565098 |
acttgatcaaggaggaggtggaacaagcatgtcccggcattgtgtcgtgtgctgacatacttgctcttgccgcaagagattccgttcttttggtatgttc |
32564999 |
T |
|
| Q |
206 |
ct |
207 |
Q |
| |
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|| |
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|
| T |
32564998 |
ct |
32564997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 32305500 - 32305706
Alignment:
| Q |
3 |
ggatgtgatgattccttgctattggaggacaatggtgatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaag |
102 |
Q |
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|||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32305500 |
ggatgtgatgcttccttgctattggaagactatggtgatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaag |
32305599 |
T |
|
| Q |
103 |
ttgacttgatcaaggaggaggtggaacaagcatgtcccggcgttgtatcttgtgctgacatacttgctcttgccgcaagagattccgttcttttggtttg |
202 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
32305600 |
ttgacttgatcaaggaggaggtggatcaagcatgtcccggcgttgtgtcttgtactgacatacttgctcttgtcacaagagattccgttcttttggtttg |
32305699 |
T |
|
| Q |
203 |
ttcctaa |
209 |
Q |
| |
|
||||||| |
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|
| T |
32305700 |
ttcctaa |
32305706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 6 - 205
Target Start/End: Original strand, 28220847 - 28221046
Alignment:
| Q |
6 |
tgtgatgattccttgctattggaggacaatggtgatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaagttg |
105 |
Q |
| |
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||||||| ||||||| | |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
28220847 |
tgtgatgcttccttgttgttggaggacaatggtgatagaaacagttcctatgagaagcaagctattccaaatcaaacattgaaaggtaatgacaaagttg |
28220946 |
T |
|
| Q |
106 |
acttgatcaaggaggaggtggaacaagcatgtcccggcgttgtatcttgtgctgacatacttgctcttgccgcaagagattccgttcttttggtttgttc |
205 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||| ||||||||||||| |
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| T |
28220947 |
acttgattaaggaggaggtcgaacaagcatgtcccggcgttgtctcttgtgctgacatacttgctcttgcagcgagagattccgtttttttggtttgttc |
28221046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 39 - 205
Target Start/End: Complemental strand, 28215376 - 28215210
Alignment:
| Q |
39 |
gatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaagttgacttgatcaaggaggaggtggaacaagcatgtc |
138 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28215376 |
gatagaaacatttcctatgagaagcaggctattccaaatcaaacattaaaaggttttgacaaagttgacttgattaaggaggaggtggaacaagcatgtc |
28215277 |
T |
|
| Q |
139 |
ccggcgttgtatcttgtgctgacatacttgctcttgccgcaagagattccgttcttttggtttgttc |
205 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| || |||||||||||| ||||||||||||| |
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| T |
28215276 |
ccggcgttgtctcttgtgctgacatacttgctcttgcagcgagagattccgtttttttggtttgttc |
28215210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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