View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8519_low_23 (Length: 215)
Name: NF8519_low_23
Description: NF8519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8519_low_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 15390758 - 15390971
Alignment:
| Q |
1 |
cgactaatgtaattacccctaaaaagaacaacatacaaatttatgtattataaagttgtaaacaattctcaacattttgaagagattcctcgtattgata |
100 |
Q |
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| T |
15390758 |
cgactaatgtaattacccctaaaaagaacaacatacaaatttatgtattataaagttgtaaacaattctcaacattttgtagagattcctcgtattgata |
15390857 |
T |
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| Q |
101 |
gtctttgtagatgagacaacaatggacatttgtttatgttgaaatgtgaaagaaatttttgggatcagatgaagtactgctttgtgatatgagattttcc |
200 |
Q |
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| T |
15390858 |
gtctttgcagatgagacaacaatggacatttgtttacgttgaaatgtgaaagaaa-ttttgggatcagatggagtactgcttcgtgatatgacattttcc |
15390956 |
T |
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| Q |
201 |
ccaaacacgtaattc |
215 |
Q |
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| T |
15390957 |
ccaaacacgtaattc |
15390971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 21927417 - 21927499
Alignment:
| Q |
4 |
ctaatgtaattacccctaaaaagaacaacatacaaatttatgtattataaagttgtaaacaattctcaacattttgaagagatt |
87 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| | |||| | ||||||||||| ||||||||| |||||||| |
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| T |
21927417 |
ctaatgtaattacccctaaaaagaacatcatacaaatttatgcgtgataatg-tgtaaacaattgccaacattttaaagagatt |
21927499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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