View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8519_low_3 (Length: 454)
Name: NF8519_low_3
Description: NF8519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8519_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Original strand, 55012359 - 55012780
Alignment:
| Q |
16 |
agataaagtatgaaatacgtaggattaatcaaacggatgatatgtgaacagtggaaacagacaacagcaggtgaaggagttaaatccctcaatgaaaagc |
115 |
Q |
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| T |
55012359 |
agataaagtatgaaatacgtaggattaatcaaacggatgatatgtgaacagtggaaacagacaacagcaggtgaaggagttaaatccctcaatgaaaagc |
55012458 |
T |
|
| Q |
116 |
caatgacagattacatgaatattgctattcaatgctctctgcaaatcccaacgaataccccaacccccacctgtcccacaactattaaatgtaaagaaag |
215 |
Q |
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| T |
55012459 |
caatgacagattacatgaatattgctattcaatgctctctgcaaatcccaacgaataccccaactcccacctgtcccacaactattaaatgtaaagaaag |
55012558 |
T |
|
| Q |
216 |
tttttcctttcccactagttactccatttttgtatattcatgtcaactatttccaagagcaagacaaccaggacatgcttaattggttcagatcaattta |
315 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55012559 |
ttt--cctttcccactagttactccatttttgtatattcatgtcaactatttccaagagcaagacaaccaggacatgcttaattggttcagatgaattta |
55012656 |
T |
|
| Q |
316 |
ttacttatataaagttcaatatcacggaatttgcatcagtatatctacatttccccttatggattcatatcttaattagtactcaccctcttattcactt |
415 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55012657 |
ttacttgtataaagttcaatatcacggaatttgcattagtatatctacatttccccttatggattcatatcttaattagtactcaccctcttattcactt |
55012756 |
T |
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| Q |
416 |
cctctttaattgatgtttccttct |
439 |
Q |
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|||||||||||||||||||||||| |
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| T |
55012757 |
cctctttaattgatgtttccttct |
55012780 |
T |
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