View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8519_low_5 (Length: 408)
Name: NF8519_low_5
Description: NF8519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8519_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 34260108 - 34260509
Alignment:
| Q |
1 |
ttgcttcttattagagatgcaattcagtgcacaagcaaatatctttgaggcagaggtcttgccggtaccacgtggaccatggaagagataaaatgatgtt |
100 |
Q |
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| T |
34260108 |
ttgcttcttattagagatgcaattcagtgcacaagcaaatatctttgaggcagaggtcttgccggtaccacgtggaccatggaagagataaaatgatgtt |
34260207 |
T |
|
| Q |
101 |
atccttctactagagagtgcagccaaaagagacctaactaccatatcttgtcccaccaaatcatcaaatgatagaggtctgaatttcatagataacattc |
200 |
Q |
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| T |
34260208 |
atccttctactagagagtgcagccaaaagagacctaactaccatatcttgtcccaccaaatcatcaaatgatagaggtctgaatttcatagataacattc |
34260307 |
T |
|
| Q |
201 |
taggagtttccaaatttggactactttcgccgccattgtctctcacatttctatgtccatgaagatccgtgtcatcaacgcagtgcaatatcaaggaacg |
300 |
Q |
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| T |
34260308 |
taggagtttccaaatttggactactttcgccgccattgtctctcacatttctatgtccatgaagatccgtgtcatcaacgcagttcaatatcaaggaacg |
34260407 |
T |
|
| Q |
301 |
gtcttctttctcaaaacaaagatttgattctctaaacctaggagaatttgacaggcaacagttttttccacatccattttccctattatctagaacacca |
400 |
Q |
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| T |
34260408 |
gtcttctttctcaaaacaaagatttgattctctaaacctaggagaatttgacaggcaacagttttttccacatccattttccctattatctagaacacca |
34260507 |
T |
|
| Q |
401 |
aa |
402 |
Q |
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|| |
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| T |
34260508 |
aa |
34260509 |
T |
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Back To:
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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 43112288 - 43112484
Alignment:
| Q |
14 |
gagatgcaattcagtgcacaagcaaatatctttgaggcagaggtcttgccggtaccacgtggaccatggaagagataaaatgatgttatccttctactag |
113 |
Q |
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|||||||||||||||||| |||||||||| | || ||||| || || || || ||||| |||||||| || ||||| ||||||| |||||||| |||| |
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| T |
43112288 |
gagatgcaattcagtgcagcagcaaatatcctcgatgcagatgtttttcccgttccacgaggaccatgaaatagatagaatgatgctatccttcctctag |
43112387 |
T |
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| Q |
114 |
agagtgcagccaaaagagacctaactaccatatcttgtcccaccaaatcatcaaatgatagaggtctgaatttcatagataacattctaggagtttc |
210 |
Q |
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||| |||| || |||||||| || | ||||||| |||||| |||||||||| || ||| || || |||||||||||||| ||||||||||||| |
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| T |
43112388 |
agattgcacccgaaagagacttaccaaccatattttgtccaaccaaatcattgaaagatttcggcctaaatttcatagataaacttctaggagtttc |
43112484 |
T |
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