View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8519_low_7 (Length: 383)
Name: NF8519_low_7
Description: NF8519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8519_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 15444206 - 15443961
Alignment:
| Q |
17 |
atattcttgcattgtgaggtggcgatgaaggtgtgagaaaaggtgttccggtggctcaattttaacttcttaattctacataatttatctgtggattttg |
116 |
Q |
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| T |
15444206 |
atattcttgcattgtgaggtggcgatgaaggtgtgagaaaaggtgttccgatggctcaattttaacttcttaattctacataatttatctgtggattttg |
15444107 |
T |
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| Q |
117 |
actgttagagtgcggaggtgcagagtaagaagttctgtaagggctatcggtcaatttgacatgtgtctacgtgggtgatatggaagatgagaaatgatag |
216 |
Q |
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| T |
15444106 |
actgttagagtgcggaggtgcagagtaagaagttatgtaagggctatcggtcaatttgagatgcatctatgtgggtgatatgaaagatgagaaatgatag |
15444007 |
T |
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| Q |
217 |
taacaaagggggtggatgacaatgacatagtagatgagattaaggtt |
263 |
Q |
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| T |
15444006 |
taac-aagggggtggatgacaatgaaatggtagatgagattaaggtt |
15443961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 15443973 - 15443920
Alignment:
| Q |
308 |
tgagattaaggttgccgtatatttacgctgttcgttgtaattttttatctagtt |
361 |
Q |
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| T |
15443973 |
tgagattaaggttgccgtatatttacggtgctcgttgtaattttttatctagtt |
15443920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 47210028 - 47210140
Alignment:
| Q |
20 |
ttcttgcattgtgaggtggcgatgaaggtgtgagaaaaggtgttccggtggctcaattttaacttcttaattctacataatttatctgtggattttgact |
119 |
Q |
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| T |
47210028 |
ttcttgcattgtgaggtggtgatgaaggagtgggaaaaggtgttcatgtggctcaattttaacgtcttgattccacataatttgtttgtacattttgaat |
47210127 |
T |
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| Q |
120 |
gttagagtgcgga |
132 |
Q |
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| T |
47210128 |
gttggagtgcgga |
47210140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 179
Target Start/End: Original strand, 31719484 - 31719615
Alignment:
| Q |
47 |
gtgtgagaaaaggtgttccggtggctcaattttaacttcttaattctacataatttatctgtggattttgactgttagagtgcggaggtgcagagtaaga |
146 |
Q |
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| T |
31719484 |
gtgtgggaaaagttgttccggtggttaaattttaacttcataattccaaataatctttttgtgcattt-gattgttggaatgcggaggtgcggaataaga |
31719582 |
T |
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| Q |
147 |
agttctgtaagggctatcggtcaatttgacatg |
179 |
Q |
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| T |
31719583 |
agttgcgtaagggcttttggtcaatttggcatg |
31719615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 47210252 - 47210304
Alignment:
| Q |
238 |
atgacatagtagatgagattaaggttttgtcttggcaatgtagcttgcataga |
290 |
Q |
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| T |
47210252 |
atgacatggtggatgaaatcaagattttgtcttggcaatggagcttgcataga |
47210304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 20748836 - 20748702
Alignment:
| Q |
67 |
gtggctcaattttaacttcttaattctacataatttatctgtggattttgactgttagagtgcggaggtgcagagtaagaagttctgtaagggctatcgg |
166 |
Q |
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| T |
20748836 |
gtggctcacctttaacttcttaattgaacataatttgtttgtgcattttgaatgttggagtgtggaggtgcaaaataataagttgagtaagggtttttgg |
20748737 |
T |
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| Q |
167 |
tcaatttgacatgtgtctacgtgggtgatatggaa |
201 |
Q |
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| T |
20748736 |
ttaatttgacatgcgtctatatgggtaatatggaa |
20748702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 5451545 - 5451633
Alignment:
| Q |
47 |
gtgtgagaaaaggtgttccggtggctcaattttaacttcttaattctacataatttatctgtggattttgactgttagagtgcggaggt |
135 |
Q |
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| T |
5451545 |
gtgtgggaaaaggtgttacggtggttaaattttaacttcttcattccacctaatctttttgtgcattttgaatgttgtagtgcggaggt |
5451633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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