View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8520_low_1 (Length: 489)

Name: NF8520_low_1
Description: NF8520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8520_low_1
NF8520_low_1
[»] chr7 (29 HSPs)
chr7 (37-477)||(443983-444427)
chr7 (417-480)||(24748972-24749036)
chr7 (418-480)||(31434892-31434955)
chr7 (417-471)||(13099316-13099370)
chr7 (417-480)||(37411964-37412029)
chr7 (417-471)||(44724969-44725023)
chr7 (427-471)||(9679451-9679495)
chr7 (417-480)||(21678444-21678507)
chr7 (417-467)||(9681216-9681266)
chr7 (417-472)||(25357323-25357379)
chr7 (417-473)||(26804900-26804956)
chr7 (425-476)||(4295788-4295839)
chr7 (417-480)||(38394373-38394435)
chr7 (417-468)||(42223550-42223601)
chr7 (418-480)||(44951-45012)
chr7 (417-471)||(7094300-7094353)
chr7 (417-471)||(20297758-20297811)
chr7 (418-480)||(21680410-21680472)
chr7 (418-480)||(25542915-25542976)
chr7 (418-480)||(42330846-42330908)
chr7 (418-471)||(1606775-1606827)
chr7 (418-471)||(21591989-21592042)
chr7 (420-472)||(25410410-25410463)
chr7 (418-467)||(27306076-27306125)
chr7 (417-470)||(27832487-27832540)
chr7 (416-472)||(2075383-2075438)
chr7 (417-480)||(11355642-11355706)
chr7 (415-467)||(24465926-24465978)
chr7 (417-472)||(44512362-44512418)
[»] chr6 (24 HSPs)
chr6 (418-480)||(3629711-3629773)
chr6 (417-471)||(10584359-10584414)
chr6 (417-471)||(3631783-3631837)
chr6 (418-480)||(13057597-13057659)
chr6 (418-471)||(13040179-13040232)
chr6 (417-470)||(15367446-15367499)
chr6 (417-480)||(11982871-11982933)
chr6 (418-480)||(15530003-15530068)
chr6 (417-471)||(24338294-24338348)
chr6 (418-471)||(9020345-9020398)
chr6 (420-480)||(22491017-22491077)
chr6 (417-468)||(3394787-3394838)
chr6 (417-480)||(8717194-8717256)
chr6 (417-480)||(17012440-17012503)
chr6 (418-468)||(3233567-3233617)
chr6 (417-467)||(15346764-15346814)
chr6 (417-471)||(26068234-26068287)
chr6 (418-480)||(29754549-29754610)
chr6 (418-471)||(12195354-12195406)
chr6 (417-471)||(26065403-26065458)
chr6 (418-471)||(26065961-26066013)
chr6 (417-471)||(26085372-26085427)
chr6 (417-472)||(17694700-17694755)
chr6 (417-472)||(35201156-35201211)
[»] chr2 (24 HSPs)
chr2 (417-471)||(6263992-6264046)
chr2 (417-471)||(22287180-22287234)
chr2 (417-471)||(21520533-21520587)
chr2 (418-480)||(19007988-19008051)
chr2 (421-479)||(34979437-34979495)
chr2 (417-471)||(42923292-42923346)
chr2 (417-471)||(42923350-42923404)
chr2 (422-471)||(6258666-6258715)
chr2 (417-480)||(36560980-36561042)
chr2 (417-471)||(3022529-3022583)
chr2 (417-471)||(11739420-11739474)
chr2 (418-471)||(17849474-17849528)
chr2 (418-471)||(22874466-22874519)
chr2 (417-469)||(22405769-22405821)
chr2 (424-480)||(27105150-27105206)
chr2 (418-472)||(17943812-17943867)
chr2 (425-471)||(23871175-23871222)
chr2 (418-471)||(14837625-14837679)
chr2 (418-480)||(22162869-22162931)
chr2 (417-471)||(28196992-28197046)
chr2 (447-480)||(7462819-7462852)
chr2 (418-471)||(43623423-43623476)
chr2 (417-472)||(17462713-17462768)
chr2 (417-468)||(22707594-22707646)
[»] chr4 (38 HSPs)
chr4 (418-480)||(2891718-2891780)
chr4 (415-467)||(5101355-5101407)
chr4 (417-465)||(24446501-24446549)
chr4 (417-480)||(22802576-22802639)
chr4 (418-480)||(47563185-47563248)
chr4 (417-471)||(16453743-16453797)
chr4 (418-471)||(16455661-16455714)
chr4 (418-471)||(3824447-3824502)
chr4 (418-478)||(27499476-27499536)
chr4 (417-480)||(14789272-14789335)
chr4 (417-480)||(36921337-36921400)
chr4 (418-468)||(6765285-6765335)
chr4 (425-471)||(12395697-12395743)
chr4 (425-471)||(12400659-12400705)
chr4 (417-467)||(13547594-13547644)
chr4 (418-480)||(14787274-14787336)
chr4 (418-480)||(37089212-37089274)
chr4 (418-480)||(38928024-38928086)
chr4 (418-471)||(33415334-33415387)
chr4 (415-480)||(36919426-36919491)
chr4 (419-480)||(6133263-6133326)
chr4 (417-471)||(18311214-18311269)
chr4 (417-471)||(18409191-18409246)
chr4 (417-468)||(38269994-38270044)
chr4 (417-480)||(53405564-53405627)
chr4 (417-480)||(4215729-4215793)
chr4 (338-377)||(46308702-46308743)
chr4 (418-468)||(47275162-47275212)
chr4 (415-468)||(619295-619348)
chr4 (418-467)||(9148679-9148727)
chr4 (418-471)||(22800705-22800758)
chr4 (252-309)||(46303845-46303902)
chr4 (417-472)||(4558584-4558640)
chr4 (417-472)||(11853842-11853898)
chr4 (417-472)||(15312594-15312650)
chr4 (417-472)||(40091258-40091314)
chr4 (416-480)||(47868833-47868896)
chr4 (417-472)||(55822537-55822592)
[»] chr3 (40 HSPs)
chr3 (418-480)||(24980064-24980126)
chr3 (417-480)||(3315038-3315101)
chr3 (418-480)||(51674608-51674671)
chr3 (415-480)||(42992738-42992802)
chr3 (425-480)||(27635504-27635560)
chr3 (417-480)||(32219440-32219504)
chr3 (417-480)||(18099009-18099072)
chr3 (417-480)||(28412869-28412931)
chr3 (425-479)||(53468302-53468357)
chr3 (418-468)||(15781243-15781293)
chr3 (417-470)||(29897526-29897580)
chr3 (417-471)||(53917505-53917559)
chr3 (418-479)||(6484712-6484773)
chr3 (418-471)||(32263881-32263934)
chr3 (415-471)||(54691414-54691469)
chr3 (417-480)||(1321836-1321898)
chr3 (418-480)||(1626525-1626588)
chr3 (418-480)||(3307113-3307176)
chr3 (417-480)||(28101847-28101910)
chr3 (418-464)||(39715836-39715883)
chr3 (417-480)||(42990656-42990718)
chr3 (417-480)||(53591535-53591598)
chr3 (418-480)||(747116-747177)
chr3 (418-480)||(9604447-9604508)
chr3 (417-471)||(10621365-10621418)
chr3 (418-480)||(18096740-18096802)
chr3 (418-480)||(36012181-36012243)
chr3 (417-471)||(43226443-43226496)
chr3 (417-471)||(43421259-43421313)
chr3 (425-471)||(45883304-45883350)
chr3 (418-471)||(17795616-17795669)
chr3 (418-471)||(19104056-19104109)
chr3 (425-471)||(25688005-25688053)
chr3 (418-471)||(28181364-28181417)
chr3 (418-471)||(28761287-28761340)
chr3 (418-471)||(38210737-38210789)
chr3 (418-471)||(50494365-50494417)
chr3 (418-471)||(53915338-53915391)
chr3 (418-471)||(1313768-1313822)
chr3 (417-472)||(22625828-22625883)
[»] chr1 (39 HSPs)
chr1 (417-471)||(28206911-28206965)
chr1 (417-471)||(41647302-41647356)
chr1 (417-480)||(50078634-50078698)
chr1 (417-480)||(18839960-18840023)
chr1 (418-480)||(2949079-2949141)
chr1 (417-471)||(16429334-16429388)
chr1 (417-471)||(28998093-28998147)
chr1 (417-471)||(29003809-29003863)
chr1 (418-480)||(39932452-39932514)
chr1 (418-471)||(3579431-3579483)
chr1 (418-471)||(13215465-13215518)
chr1 (420-471)||(25251123-25251174)
chr1 (417-468)||(38925327-38925378)
chr1 (253-315)||(3804121-3804183)
chr1 (417-471)||(6995539-6995593)
chr1 (418-480)||(17319259-17319321)
chr1 (418-472)||(18307489-18307543)
chr1 (418-480)||(31422706-31422768)
chr1 (418-480)||(39462894-39462956)
chr1 (418-480)||(27336782-27336846)
chr1 (418-471)||(40134325-40134378)
chr1 (252-312)||(3801763-3801823)
chr1 (417-477)||(31424861-31424921)
chr1 (416-471)||(14097813-14097868)
chr1 (417-480)||(16226546-16226608)
chr1 (441-480)||(17324446-17324485)
chr1 (418-477)||(25248398-25248457)
chr1 (418-480)||(9459277-9459338)
chr1 (418-480)||(9463104-9463165)
chr1 (418-480)||(16231941-16232002)
chr1 (252-282)||(23618451-23618481)
chr1 (252-282)||(23649797-23649827)
chr1 (252-282)||(23735422-23735452)
chr1 (418-480)||(23816262-23816323)
chr1 (417-480)||(27338972-27339037)
chr1 (418-468)||(50248417-50248467)
chr1 (418-471)||(23786226-23786278)
chr1 (417-472)||(21353196-21353252)
chr1 (250-282)||(50668521-50668553)
[»] chr8 (20 HSPs)
chr8 (418-471)||(183257-183310)
chr8 (417-468)||(25952960-25953011)
chr8 (417-471)||(14419034-14419088)
chr8 (417-465)||(35872300-35872348)
chr8 (416-471)||(14477687-14477742)
chr8 (425-471)||(27106754-27106800)
chr8 (415-468)||(37214106-37214159)
chr8 (332-381)||(39323282-39323331)
chr8 (417-471)||(15956390-15956444)
chr8 (418-471)||(15073149-15073202)
chr8 (418-471)||(21482745-21482798)
chr8 (418-480)||(28251410-28251472)
chr8 (417-471)||(2467780-2467833)
chr8 (417-471)||(2467978-2468031)
chr8 (417-471)||(27827427-27827480)
chr8 (418-468)||(33541255-33541305)
chr8 (417-471)||(41383101-41383155)
chr8 (418-471)||(13858334-13858387)
chr8 (418-471)||(24873039-24873091)
chr8 (418-471)||(27829738-27829790)
[»] scaffold0004 (1 HSPs)
scaffold0004 (417-480)||(80243-80306)
[»] chr5 (30 HSPs)
chr5 (417-480)||(18467061-18467124)
chr5 (417-480)||(20505686-20505749)
chr5 (417-471)||(6745454-6745508)
chr5 (417-478)||(37705625-37705687)
chr5 (418-471)||(16092045-16092098)
chr5 (419-480)||(12555757-12555820)
chr5 (424-480)||(21948406-21948462)
chr5 (422-480)||(17818338-17818397)
chr5 (417-480)||(26098128-26098193)
chr5 (418-489)||(1189454-1189523)
chr5 (417-480)||(24127229-24127292)
chr5 (417-480)||(27910810-27910873)
chr5 (417-480)||(36402169-36402232)
chr5 (418-468)||(2954799-2954849)
chr5 (417-471)||(6747690-6747744)
chr5 (418-480)||(18469386-18469448)
chr5 (417-471)||(41585579-41585633)
chr5 (419-471)||(6756873-6756926)
chr5 (418-471)||(10587200-10587252)
chr5 (418-471)||(34530559-34530612)
chr5 (420-468)||(27912925-27912973)
chr5 (417-473)||(40221908-40221964)
chr5 (418-480)||(658204-658265)
chr5 (418-471)||(696256-696310)
chr5 (446-480)||(16776532-16776566)
chr5 (417-471)||(18511055-18511109)
chr5 (417-471)||(20043371-20043425)
chr5 (418-471)||(3372977-3373029)
chr5 (331-389)||(8185854-8185914)
chr5 (418-471)||(39397857-39397910)
[»] scaffold0005 (2 HSPs)
scaffold0005 (417-480)||(50395-50458)
scaffold0005 (418-480)||(52394-52456)
[»] scaffold0025 (1 HSPs)
scaffold0025 (418-480)||(69133-69194)
[»] scaffold0472 (1 HSPs)
scaffold0472 (416-471)||(6594-6648)
[»] scaffold0339 (1 HSPs)
scaffold0339 (418-468)||(4387-4437)
[»] scaffold0267 (1 HSPs)
scaffold0267 (418-480)||(412-473)
[»] scaffold0031 (1 HSPs)
scaffold0031 (418-471)||(79578-79631)


Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 37 - 477
Target Start/End: Complemental strand, 444427 - 443983
Alignment:
Q  37 aatgcatacataaaactaaatagaagccagtaaaagagcaaaaaagacttgttcg-ccaaaatcacaactccttgtctgacatactcatagtcataataa 135  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  444427 aatgcatacataaaactaaatagaagccggtaaaagagcaaaaaagacttgttcggccaaaatcacaactccttgtctgacatactcatactcataataa 444328  T
Q  136 acaaaatccaacaatacaaaactttttaaatgtagagtaaaactccagctgaatgaaatcaccaagactggcaaaaata-ccaacataaacataagcata 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  444327 acaaaatccaacaatacaaaactttttaaatgtagagtaaaactccagctgaatgaaatcaccaagactggcaaaaaaaaccaacataaacataagcata 444228  T
Q  235 agcaacttattgcatttttcacatggttctaaagtcaaaatctaaatcgaattagatggatgaagtgcatgttaaaccaaattaattcagctgccaacgt 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  444227 agcaacttattgcatttttcacatggttctaaagtcaaaatctaaatcgaattagatggatgaagtgcatgttaaaccaaattaattcagctgccaacgt 444128  T
Q  335 tcctttaaattccaacagagcacaactaatatgaaagaacaaaattattaaaagccgcaaaccgatagaaagacaaattcagttgttgtgaattcgatga 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  444127 tcctttaaattccaacagagcacaactaatatgaaagaacaaaattattaaaagccgcaaaccgatagaaagacaaattcagttgttgtgaattcgatga 444028  T
Q  435 gaaaact--cactaataacaaacttgatgtgtggagcaaagaata 477  Q
    |||||||  ||| |||||||||||||||||||||||||| |||||    
T  444027 gaaaactcacaccaataacaaacttgatgtgtggagcaaggaata 443983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 24749036 - 24748972
Alignment:
Q  417 ttgttgtgaattcgatgagaaaact-cactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||||||||||| | ||||||    
T  24749036 ttgttgtgaattcgatgagaaaaccacaccaataacaaacttgatgtgtggagcaagggataatc 24748972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 31434892 - 31434955
Alignment:
Q  418 tgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| |||||||||||||||| | ||| |||||||||||||||||||||||||| ||||||||    
T  31434892 tgttgcgaattcgatgagaaaatcacaccaataacaaacttgatgtgtggagcaaggaataatc 31434955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 13099316 - 13099370
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  13099316 ttgttgtgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaa 13099370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 37411964 - 37412029
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcact--aataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||| |||||||||||||||   |||||||||||||||||||||| ||| ||||||||    
T  37411964 ttgttgtgaatttgatgagaaaactcacaccaataacaaacttgatgtgtggaacaaggaataatc 37412029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 44725023 - 44724969
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||    
T  44725023 ttgttgcgaattcgatgggaaaacacaccaataacaaacttgatgtgtggagcaa 44724969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 9679495 - 9679451
Alignment:
Q  427 ttcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||    
T  9679495 ttcgatgagaaaacacaccaataacaaacttgatgtgtggagcaa 9679451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 21678507 - 21678444
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||| ||| | |||  |||||||||||||| |||||||||| ||||||||    
T  21678507 ttgttgtgaattcgatgaaaaatcacaccgataacaaacttgatttgtggagcaaggaataatc 21678444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 467
Target Start/End: Complemental strand, 9681266 - 9681216
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtgga 467  Q
    |||||||| |||| |||||||||| ||| ||||||||||||||||||||||    
T  9681266 ttgttgtgcattcaatgagaaaacacaccaataacaaacttgatgtgtgga 9681216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 472
Target Start/End: Complemental strand, 25357379 - 25357323
Alignment:
Q  417 ttgttgtgaattcgatgagaaaact-cactaataacaaacttgatgtgtggagcaaa 472  Q
    ||||||| |||||| |||||||||  ||| |||||||||||||||||||||||||||    
T  25357379 ttgttgtcaattcgttgagaaaaccacaccaataacaaacttgatgtgtggagcaaa 25357323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 473
Target Start/End: Complemental strand, 26804956 - 26804900
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaag 473  Q
    |||||| ||||| ||||||||| | ||| ||||||||| ||||||||||||||||||    
T  26804956 ttgttgcgaatttgatgagaaatcacaccaataacaaatttgatgtgtggagcaaag 26804900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 476
Target Start/End: Original strand, 4295788 - 4295839
Alignment:
Q  425 aattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaat 476  Q
    |||||||||| ||| | ||| |||||||||||||||||||||||||| ||||    
T  4295788 aattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaaggaat 4295839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 38394435 - 38394373
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||| ||| | ||| |||||| ||||||||||||||||||| | ||||||    
T  38394435 ttgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaagggataatc 38394373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 468
Target Start/End: Complemental strand, 42223601 - 42223550
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    |||||| ||||||||| | ||||| ||| |||||||||||||||||||||||    
T  42223601 ttgttgcgaattcgataaaaaaacacaccaataacaaacttgatgtgtggag 42223550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 45012 - 44951
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| ||||||||||||||| | ||| |||||||| ||||||||||||||||| | ||||||    
T  45012 tgttgcgaattcgatgagaaatcacaccaataacaa-cttgatgtgtggagcaatggataatc 44951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 7094300 - 7094353
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||| ||||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  7094300 ttgttgcgaattcgatga-aaatcacaccaataacaaacttgatgtgtggagcaa 7094353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 20297811 - 20297758
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  20297811 ttgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaa 20297758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 21680472 - 21680410
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| ||  | ||| |||||||| ||||||||||| ||||| ||||||||    
T  21680472 tgttgtgaattcgatgaaaacccacaccaataacaagcttgatgtgtgaagcaaggaataatc 21680410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 25542976 - 25542915
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| ||| | ||| |||||||| ||||||||||||||||| | ||||||    
T  25542976 tgttgtgaattcgatgaaaaatcacaccaataacaa-cttgatgtgtggagcaagggataatc 25542915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 42330846 - 42330908
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| ||||||||||||||| | | | ||||| |||||||||||||||||||| | ||||||    
T  42330846 tgttgcgaattcgatgagaaatcacgccaataataaacttgatgtgtggagcaatggataatc 42330908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 1606827 - 1606775
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  1606827 tgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaa 1606775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 21591989 - 21592042
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||| ||||||||||||||||| |    |||||||||||||||||||||||||    
T  21591989 tgttgcgaattcgatgagaaaacacggctataacaaacttgatgtgtggagcaa 21592042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 472
Target Start/End: Complemental strand, 25410463 - 25410410
Alignment:
Q  420 ttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaaa 472  Q
    ||||||||| | |||||||| | ||||||||||||||||||||||| |||||||    
T  25410463 ttgtgaatttgttgagaaaatcacactaataacaaacttgatgtgttgagcaaa 25410410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 27306076 - 27306125
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtgga 467  Q
    ||||| ||||||||||||| | | ||| ||||||||||||||||||||||    
T  27306076 tgttgcgaattcgatgagagatcacaccaataacaaacttgatgtgtgga 27306125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 470
Target Start/End: Original strand, 27832487 - 27832540
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagca 470  Q
    |||||||||||||||||| ||| |  || |||||||||||| ||||||||||||    
T  27832487 ttgttgtgaattcgatgaaaaatcataccaataacaaacttaatgtgtggagca 27832540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 2075438 - 2075383
Alignment:
Q  416 gttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaa 472  Q
    ||||||||||||||| |||| |||| ||| ||||| |||||||||| ||||||||||    
T  2075438 gttgttgtgaattcgttgag-aaacacaccaataaaaaacttgatgcgtggagcaaa 2075383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 11355706 - 11355642
Alignment:
Q  417 ttgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||| ||||||||||| |||| | ||| ||||| ||| |||||||||||||||| ||||||||    
T  11355706 ttgttgggaattcgatgaaaaaatcacaccaataataaatttgatgtgtggagcaaggaataatc 11355642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 467
Target Start/End: Complemental strand, 24465978 - 24465926
Alignment:
Q  415 agttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtgga 467  Q
    |||||||||||||||||||| ||| | ||| ||||| ||| ||||||||||||    
T  24465978 agttgttgtgaattcgatgaaaaatcacaccaataataaatttgatgtgtgga 24465926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 44512362 - 44512418
Alignment:
Q  417 ttgttgtgaattcgatgag-aaaactcactaataacaaacttgatgtgtggagcaaa 472  Q
    |||||||||||||| |||| ||||| ||| ||||| |||||||||| ||||||||||    
T  44512362 ttgttgtgaattcgttgagaaaaacacaccaataaaaaacttgatgcgtggagcaaa 44512418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 3629711 - 3629773
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  3629711 tgttgtgaattcgatgagaaaacacaccaataacaaacttgatgtgtggagcaaaggataatc 3629773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 10584414 - 10584359
Alignment:
Q  417 ttgttgtgaattcgatgagaaaact-cactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  10584414 ttgttgtgaattcgatgagaaaaccacaccaataacaaacttgatgtgtggagcaa 10584359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 3631783 - 3631837
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||    
T  3631783 ttgttgtgaattcgatgaaaaaacacaccaataacaaacttgacgtgtggagcaa 3631837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 13057659 - 13057597
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||||| ||||||    
T  13057659 tgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaaaggataatc 13057597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 13040232 - 13040179
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||    
T  13040232 tgttgcgaattcgatgaaaaatcacactaataacaaacttgatgtgtggagcaa 13040179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 470
Target Start/End: Complemental strand, 15367499 - 15367446
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagca 470  Q
    |||||||||||||||||| ||| | ||| |||||||||||||||||||||||||    
T  15367499 ttgttgtgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagca 15367446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 11982871 - 11982933
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||| ||| | ||| |||||||| ||||||||||||||||| ||||||||    
T  11982871 ttgttgtgaattcgatgaaaaatcacaccaataacaa-cttgatgtgtggagcaaggaataatc 11982933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 15530003 - 15530068
Alignment:
Q  418 tgttgtgaattcgatgagaaaa---ctcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||||||||   | ||| ||||||||||||||||||||||| || ||||||||    
T  15530003 tgttgtgaattcgatgagaaaaactcacaccaataacaaacttgatgtgtggagtaaggaataatc 15530068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 24338294 - 24338348
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||| ||| | ||  ||||||||||||||||||||||||||    
T  24338294 ttgttgtgaattcgatgaaaaatcacatcaataacaaacttgatgtgtggagcaa 24338348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 9020398 - 9020345
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||| ||||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  9020398 tgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaa 9020345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 480
Target Start/End: Complemental strand, 22491077 - 22491017
Alignment:
Q  420 ttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||| ||| | ||| |||||||||||| ||||||||||| ||| ||||||    
T  22491077 ttgtgaattcgatgaaaaatcacaccaataacaaacttaatgtgtggagctaaggataatc 22491017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 468
Target Start/End: Complemental strand, 3394838 - 3394787
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    |||||| ||||||||||||||||| ||| ||||| || ||||||||||||||    
T  3394838 ttgttgcgaattcgatgagaaaacacaccaataaaaatcttgatgtgtggag 3394787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 8717194 - 8717256
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||| ||| | ||| |||||| ||||||||||||||||||| | ||||||    
T  8717194 ttgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaagggataatc 8717256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 17012503 - 17012440
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||| ||| | ||  ||||| | ||||||||||||||||||| |||||||    
T  17012503 ttgttgtgaattcgatgaaaaatcacaacaataaaatacttgatgtgtggagcaaataataatc 17012440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 468
Target Start/End: Original strand, 3233567 - 3233617
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    ||||| ||||||||||||||||| ||  ||||||||| |||||||||||||    
T  3233567 tgttgcgaattcgatgagaaaacacatcaataacaaatttgatgtgtggag 3233617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 467
Target Start/End: Complemental strand, 15346814 - 15346764
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtgga 467  Q
    ||||||| |||||||||| ||| | ||| ||||||||||||||||||||||    
T  15346814 ttgttgtaaattcgatgaaaaatcacaccaataacaaacttgatgtgtgga 15346764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 26068234 - 26068287
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  26068234 ttgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaa 26068287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 29754549 - 29754610
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| ||| | ||| |||||| ||||||||||||||||||| | ||||||    
T  29754549 tgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaagggataatc 29754610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 12195354 - 12195406
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  12195354 tgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaa 12195406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 26065458 - 26065403
Alignment:
Q  417 ttgttgtgaattcgatgagaaaa--ctcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||||||||  | ||| |||||| |||||||||||||||||||    
T  26065458 ttgttgtgaattcgatgagaaaaatcacaccaataac-aacttgatgtgtggagcaa 26065403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 26065961 - 26066013
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  26065961 tgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaa 26066013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 26085427 - 26085372
Alignment:
Q  417 ttgttgtgaattcgatgagaaaa--ctcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||||||||  | ||| |||||| |||||||||||||||||||    
T  26085427 ttgttgtgaattcgatgagaaaaatcacaccaataac-aacttgatgtgtggagcaa 26085372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 17694700 - 17694755
Alignment:
Q  417 ttgttgtgaattcgatgagaaaact-cactaataacaaacttgatgtgtggagcaaa 472  Q
    |||||||||||||| |||||||||  ||| ||||| |||||||||||||||||||||    
T  17694700 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatgtgtggagcaaa 17694755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 35201156 - 35201211
Alignment:
Q  417 ttgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaaa 472  Q
    |||||||||||||| |||||||| | ||||||||| |||||||||| ||||||||||    
T  35201156 ttgttgtgaattcgttgagaaaaccacactaataa-aaacttgatgcgtggagcaaa 35201211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 6263992 - 6264046
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6263992 ttgttgtgaattcgatgagaaaacacactaataacaaacttgatgtgtggagcaa 6264046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 22287180 - 22287234
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  22287180 ttgttgtgaattcgatgagaaaacacaccaataacaaacttgatgtgtggagcaa 22287234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 21520533 - 21520587
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  21520533 ttgttgcgaattcgatgagaaaacacaccaataacaaacttgatgtgtggagcaa 21520587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 19008051 - 19007988
Alignment:
Q  418 tgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| |||| | ||| |||||||||||||||||||||||||| ||||||||    
T  19008051 tgttgtgaattcgatgaaaaaatcacaccaataacaaacttgatgtgtggagcaaggaataatc 19007988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 421 - 479
Target Start/End: Original strand, 34979437 - 34979495
Alignment:
Q  421 tgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataat 479  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||| || |||||||    
T  34979437 tgtgaattcaatgagaaaacacaccaataacaaacttgatgtgtggagtaaggaataat 34979495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 42923292 - 42923346
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||| || |||||| ||| ||||||||||||||||||||||||||    
T  42923292 ttgttgtgaattcgttgtgaaaacacaccaataacaaacttgatgtgtggagcaa 42923346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 42923350 - 42923404
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||| || |||||| ||| ||||||||||||||||||||||||||    
T  42923350 ttgttgtgaattcgttgtgaaaacacaccaataacaaacttgatgtgtggagcaa 42923404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 471
Target Start/End: Original strand, 6258666 - 6258715
Alignment:
Q  422 gtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||||  || ||||||||||||||||||||||||||    
T  6258666 gtgaattcgatgagaaaacataccaataacaaacttgatgtgtggagcaa 6258715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 36560980 - 36561042
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||| ||| | ||| |||||||| ||||||||||||||||| ||||||||    
T  36560980 ttgttgtgaattcgatgaaaaatcacaccaataacaa-cttgatgtgtggagcaaggaataatc 36561042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 3022583 - 3022529
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||| ||||| | | ||| ||||||||||||||||||||||||||    
T  3022583 ttgttgtgaattcggtgagagatcacacaaataacaaacttgatgtgtggagcaa 3022529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 11739420 - 11739474
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||| ||| | ||| ||||||||||||||||||| ||||||    
T  11739420 ttgttgtgaattcgatgaaaaatcacaccaataacaaacttgatgtgtagagcaa 11739474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 17849528 - 17849474
Alignment:
Q  418 tgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||    
T  17849528 tgttgtgaattcgatgaaaaaatcacaccaataacaaacttgatgtgtggagcaa 17849474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 22874519 - 22874466
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| ||||| ||||||||||||||||||||    
T  22874519 tgttgtgaattcgatgaaaaatcacaccaataataaacttgatgtgtggagcaa 22874466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 469
Target Start/End: Original strand, 22405769 - 22405821
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagc 469  Q
    ||||||||||||| | |||||||| ||  ||||||||||||||||||||||||    
T  22405769 ttgttgtgaattcaacgagaaaacacatcaataacaaacttgatgtgtggagc 22405821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 480
Target Start/End: Complemental strand, 27105206 - 27105150
Alignment:
Q  424 gaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  27105206 gaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaagggataatc 27105150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 472
Target Start/End: Complemental strand, 17943867 - 17943812
Alignment:
Q  418 tgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaaa 472  Q
    ||||||||||||| |||||||| | ||| |||||||||||||||| ||||||||||    
T  17943867 tgttgtgaattcgttgagaaaaacacaccaataacaaacttgatgcgtggagcaaa 17943812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 471
Target Start/End: Complemental strand, 23871222 - 23871175
Alignment:
Q  425 aattcgatgagaaaact-cactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||||||    
T  23871222 aattcgatgagaaaactacaccaataacaaatttgatgtgtggagcaa 23871175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 14837679 - 14837625
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaa-acttgatgtgtggagcaa 471  Q
    ||||||||||||||||||||| | ||  |||||||| ||||||||||||||||||    
T  14837679 tgttgtgaattcgatgagaaatcacatcaataacaatacttgatgtgtggagcaa 14837625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 22162869 - 22162931
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| ||||||||||||||||| ||| ||||||||  |||||||||| ||||| | ||||||    
T  22162869 tgttgcgaattcgatgagaaaacacaccaataacaattttgatgtgtgaagcaagggataatc 22162931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 28197046 - 28196992
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||| |||||||| ||| | ||| ||||||||| ||||||||||||||||    
T  28197046 ttgttgtgagttcgatgaaaaatcacaccaataacaaatttgatgtgtggagcaa 28196992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 480
Target Start/End: Original strand, 7462819 - 7462852
Alignment:
Q  447 ataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||||||||||||| ||||||    
T  7462819 ataacaaacttgatgtgtggagcaaaggataatc 7462852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 43623423 - 43623476
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||| ||||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  43623423 tgttgcgaattcgatgaaaaatcacaccaataactaacttgatgtgtggagcaa 43623476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 472
Target Start/End: Complemental strand, 17462768 - 17462713
Alignment:
Q  417 ttgttgtgaattcgatgagaaaact-cactaataacaaacttgatgtgtggagcaaa 472  Q
    |||||||||||||| |||||||||  ||| ||||| |||||||||||||||||||||    
T  17462768 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatgtgtggagcaaa 17462713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 468
Target Start/End: Original strand, 22707594 - 22707646
Alignment:
Q  417 ttgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggag 468  Q
    |||||| |||||||||||||||| | ||| ||||||||| |||||||||||||    
T  22707594 ttgttgcgaattcgatgagaaaaccacaccaataacaaatttgatgtgtggag 22707646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 2891780 - 2891718
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||    
T  2891780 tgttgtgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaaagaataatc 2891718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 415 - 467
Target Start/End: Complemental strand, 5101407 - 5101355
Alignment:
Q  415 agttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtgga 467  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  5101407 agttgttgtgaattcgatgagaaaacacaccaataacaaacttgatgtgtgga 5101355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 465
Target Start/End: Original strand, 24446501 - 24446549
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtg 465  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  24446501 ttgttgtgaattcgatgagaaaacacaccaataacaaacttgatgtgtg 24446549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 22802576 - 22802639
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  22802576 ttgttgtgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaagggataatc 22802639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 47563248 - 47563185
Alignment:
Q  418 tgttgtgaattcgatgagaaaact-cactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||| |||||||||||  ||| |||||||||||||||||||||||||| ||||||||    
T  47563248 tgttgtgaatttgatgagaaaaccacaccaataacaaacttgatgtgtggagcaaggaataatc 47563185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 16453797 - 16453743
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  16453797 ttgttgtgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaa 16453743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 16455714 - 16455661
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  16455714 tgttgtgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaa 16455661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 3824447 - 3824502
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcact--aataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||||||| ||||   ||||||||||||||||||||||||||    
T  3824447 tgttgtgaattcgatgagaaaaatcacaccaataacaaacttgatgtgtggagcaa 3824502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 478
Target Start/End: Complemental strand, 27499536 - 27499476
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataa 478  Q
    |||| |||||||||||| ||| | ||| |||||||||||||||||||||||||| ||||||    
T  27499536 tgttctgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaatgaataa 27499476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 14789272 - 14789335
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  14789272 ttgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaagggataatc 14789335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 36921337 - 36921400
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  36921337 ttgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaagggataatc 36921400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 468
Target Start/End: Complemental strand, 6765335 - 6765285
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    ||||||||||||||||| ||| | ||| |||||||||||||||||||||||    
T  6765335 tgttgtgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggag 6765285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 471
Target Start/End: Original strand, 12395697 - 12395743
Alignment:
Q  425 aattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||    
T  12395697 aattcaatgagaaaacacaccaataacaaacttgatgtgtggagcaa 12395743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 471
Target Start/End: Original strand, 12400659 - 12400705
Alignment:
Q  425 aattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||    
T  12400659 aattcaatgagaaaacacaccaataacaaacttgatgtgtggagcaa 12400705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 467
Target Start/End: Complemental strand, 13547644 - 13547594
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtgga 467  Q
    |||||||| |||| |||||||||| ||| ||||||||||||||||||||||    
T  13547644 ttgttgtgcattcaatgagaaaacacaccaataacaaacttgatgtgtgga 13547594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 14787274 - 14787336
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  14787274 tgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaagggataatc 14787336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 37089212 - 37089274
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  37089212 tgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaatggataatc 37089274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 38928024 - 38928086
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  38928024 tgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaagggataatc 38928086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 33415334 - 33415387
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||| |||| |||||||||| | ||| ||||||||||||||||||||||||||    
T  33415334 tgttgcgaatccgatgagaaatcacacaaataacaaacttgatgtgtggagcaa 33415387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 480
Target Start/End: Original strand, 36919426 - 36919491
Alignment:
Q  415 agttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| || ||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  36919426 agttgctgcgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaagggataatc 36919491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 480
Target Start/End: Complemental strand, 6133326 - 6133263
Alignment:
Q  419 gttgtgaattcgatgagaaaact--cactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||  |||| |  ||| |||||||||||||||||||||||||| ||||||||    
T  6133326 gttgtgaattcgatggaaaaaattacaccaataacaaacttgatgtgtggagcaaggaataatc 6133263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 18311214 - 18311269
Alignment:
Q  417 ttgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||| |||| | ||| ||||| ||||||||||||||||||||    
T  18311214 ttgttgtgaattcgatgaaaaaatcacaccaataataaacttgatgtgtggagcaa 18311269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 18409191 - 18409246
Alignment:
Q  417 ttgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||| |||| | ||| ||||| ||||||||||||||||||||    
T  18409191 ttgttgtgaattcgatgaaaaaatcacaccaataataaacttgatgtgtggagcaa 18409246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 468
Target Start/End: Original strand, 38269994 - 38270044
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    |||||| ||||||||| ||||||| ||| |||||||||||||||||||||||    
T  38269994 ttgttgggaattcgat-agaaaacacaccaataacaaacttgatgtgtggag 38270044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 53405627 - 53405564
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||| ||||||||||| ||| | ||| ||||| |||||||||||||||||||| | ||||||    
T  53405627 ttgttgcgaattcgatgaaaaatcacaccaataataaacttgatgtgtggagcaagggataatc 53405564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 4215793 - 4215729
Alignment:
Q  417 ttgttgtgaattcgatgagaaaact--cactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||| ||||||||||||||||||  ||| |||||| ||||||||||||| ||||| ||||||||    
T  4215793 ttgttgcgaattcgatgagaaaactcacacaaataac-aacttgatgtgtgaagcaaggaataatc 4215729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 377
Target Start/End: Original strand, 46308702 - 46308743
Alignment:
Q  338 tttaaattccaacagag--cacaactaatatgaaagaacaaa 377  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  46308702 tttaaattccaacagagaccacaactaatatgaaagaacaaa 46308743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 468
Target Start/End: Complemental strand, 47275212 - 47275162
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    ||||||||||||| || |||||| ||  |||||||||||||||||||||||    
T  47275212 tgttgtgaattcgttgtgaaaacacatcaataacaaacttgatgtgtggag 47275162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 468
Target Start/End: Original strand, 619295 - 619348
Alignment:
Q  415 agttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    |||||||| | ||||||||||||||| ||| ||||| ||| |||||||||||||    
T  619295 agttgttgcggattcgatgagaaaacacaccaataataaatttgatgtgtggag 619348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 9148727 - 9148679
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtgga 467  Q
    ||||| ||||||||||||||||| ||| |||||| |||||||||||||||    
T  9148727 tgttgcgaattcgatgagaaaacacaccaataac-aacttgatgtgtgga 9148679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 22800705 - 22800758
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||| ||||||||||| ||| | ||| |||||||||||||||||| |||||||    
T  22800705 tgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtggggagcaa 22800758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 46303845 - 46303902
Alignment:
Q  252 ttcacatggttctaaagtcaaaatctaaatcgaattagatggatgaagtgcatgttaa 309  Q
    ||||||| ||| |||||||||||||||||||  |  ||||||||||| ||||||||||    
T  46303845 ttcacatagttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgttaa 46303902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 472
Target Start/End: Complemental strand, 4558640 - 4558584
Alignment:
Q  417 ttgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaaa 472  Q
    |||||||||||||| |||||||| | ||| ||||| |||||||||| ||||||||||    
T  4558640 ttgttgtgaattcgttgagaaaaccacaccaataataaacttgatgcgtggagcaaa 4558584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 472
Target Start/End: Complemental strand, 11853898 - 11853842
Alignment:
Q  417 ttgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaaa 472  Q
    |||||||||||||| |||||||| | ||| ||||| |||||||||| ||||||||||    
T  11853898 ttgttgtgaattcgttgagaaaaccacaccaataaaaaacttgatgggtggagcaaa 11853842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 472
Target Start/End: Complemental strand, 15312650 - 15312594
Alignment:
Q  417 ttgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaaa 472  Q
    |||||||||||||| |||||||| | ||| ||||| |||||||||| ||||||||||    
T  15312650 ttgttgtgaattcgttgagaaaaccacaccaataaaaaacttgatgcgtggagcaaa 15312594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 40091258 - 40091314
Alignment:
Q  417 ttgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaaa 472  Q
    |||||| ||||||||||| |||  | ||| |||||||||||||||||||||||||||    
T  40091258 ttgttgcgaattcgatgaaaaattcacaccaataacaaacttgatgtgtggagcaaa 40091314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 480
Target Start/End: Complemental strand, 47868896 - 47868833
Alignment:
Q  416 gttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||| ||||||||||| ||| | ||| |||||||| ||||||||||||||||| | ||||||    
T  47868896 gttgttgcgaattcgatgaaaaatcacaccaataacaa-cttgatgtgtggagcaagggataatc 47868833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 472
Target Start/End: Complemental strand, 55822592 - 55822537
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactc-actaataacaaacttgatgtgtggagcaaa 472  Q
    |||||||||||||| ||||||||||  || ||||| |||||||||||||||||||||    
T  55822592 ttgttgtgaattcgttgagaaaactataccaataa-aaacttgatgtgtggagcaaa 55822537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 24980126 - 24980064
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| | ||||||    
T  24980126 tgttgtgaattcgatgagaaaacacaccaataacaaacttgatgtgtggagcaagggataatc 24980064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 3315101 - 3315038
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||| | ||||||    
T  3315101 ttgttgcgaattcgatgagaaaacacaccaataataaacttgatgtgtggagcaagggataatc 3315038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 51674608 - 51674671
Alignment:
Q  418 tgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||| |||||||| ||||||||    
T  51674608 tgttgtgaattcgatgagaaaatcacaccaataacaaacttgatgtatggagcaaggaataatc 51674671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 480
Target Start/End: Complemental strand, 42992802 - 42992738
Alignment:
Q  415 agttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||||| ||| | ||||||||||||||||||||||| |||||| | ||||||    
T  42992802 agttgttgtgaattcgatga-aaatcacactaataacaaacttgatgtgtagagcaagggataatc 42992738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 480
Target Start/End: Original strand, 27635504 - 27635560
Alignment:
Q  425 aattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||| | ||| |||||||||||||||||||||||||| ||||||||    
T  27635504 aattcgatgagaaaatcacaccaataacaaacttgatgtgtggagcaaggaataatc 27635560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 32219504 - 32219440
Alignment:
Q  417 ttgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||| |||| | ||| |||||||||||||||||||||||||| | ||||||    
T  32219504 ttgttgtgaattcgatgaaaaaatcacacaaataacaaacttgatgtgtggagcaagggataatc 32219440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 18099009 - 18099072
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  18099009 ttgttgggaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaagggataatc 18099072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 28412869 - 28412931
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||| ||||| ||| |||||| ||||||||||||||||||| | ||||||    
T  28412869 ttgttgtgaattcgatgaaaaaacacaccaataac-aacttgatgtgtggagcaagggataatc 28412931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 425 - 479
Target Start/End: Original strand, 53468302 - 53468357
Alignment:
Q  425 aattcgatgagaaaact-cactaataacaaacttgatgtgtggagcaaagaataat 479  Q
    ||||||||||||||||  ||| |||||||||||||||||||||||||| |||||||    
T  53468302 aattcgatgagaaaaccacaccaataacaaacttgatgtgtggagcaatgaataat 53468357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 468
Target Start/End: Complemental strand, 15781293 - 15781243
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    ||||||||||||||||  ||||| ||| |||||||||||||||||||||||    
T  15781293 tgttgtgaattcgatggaaaaacacaccaataacaaacttgatgtgtggag 15781243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 470
Target Start/End: Original strand, 29897526 - 29897580
Alignment:
Q  417 ttgttgtgaattcgatgagaaaact-cactaataacaaacttgatgtgtggagca 470  Q
    |||||||||||||| |||||||||  ||| |||||||||||||||||||||||||    
T  29897526 ttgttgtgaattcgttgagaaaaccacaccaataacaaacttgatgtgtggagca 29897580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 53917505 - 53917559
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||| ||| ||||||| ||| | ||||||||||||||||||||||||||||||    
T  53917505 ttgttgcgaaatcgatgaaaaatcacactaataacaaacttgatgtgtggagcaa 53917559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 6484773 - 6484712
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataat 479  Q
    |||||||||||| || | ||| | ||||||||||||| |||||||||||||||| |||||||    
T  6484773 tgttgtgaattcaataaaaaatcacactaataacaaatttgatgtgtggagcaaggaataat 6484712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 32263881 - 32263934
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||| || ||| | ||||||||||||| ||||||||||||||||    
T  32263881 tgttgtgaattcgaagaaaaatcacactaataacaaatttgatgtgtggagcaa 32263934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 471
Target Start/End: Original strand, 54691414 - 54691469
Alignment:
Q  415 agttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||||||||||| ||  ||||||||| || |||||||||||||    
T  54691414 agttgttgtgaattcgatgagaaaacacatcaataacaaa-tttatgtgtggagcaa 54691469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 1321898 - 1321836
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  1321898 ttgttgcgaattcgatga-aaatcacaccaataacaaacttgatgtgtggagcaagggataatc 1321836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 1626525 - 1626588
Alignment:
Q  418 tgttgtgaattcgatgagaaaact-cactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| |||||| || |||||||  ||| |||||||||||||||||||||||||| ||||||||    
T  1626525 tgttgcgaattccataagaaaaccacaccaataacaaacttgatgtgtggagcaaggaataatc 1626588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 3307176 - 3307113
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataac-aaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||||| || ||||| | ||||||    
T  3307176 tgttgtgaattcgatgagaaaacacaccaataacaaaacttgatgtatgaagcaagggataatc 3307113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 28101847 - 28101910
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||| |||   ||| ||||| |||||||||||||||||||| | ||||||    
T  28101847 ttgttgtgaattcgatgaaaaattacaccaataataaacttgatgtgtggagcaagggataatc 28101910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 464
Target Start/End: Complemental strand, 39715883 - 39715836
Alignment:
Q  418 tgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgt 464  Q
    |||||||||||||||||||||| | ||| |||||||||||||||||||    
T  39715883 tgttgtgaattcgatgagaaaaccgcaccaataacaaacttgatgtgt 39715836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 42990718 - 42990656
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  42990718 ttgttgcgaattcgatga-aaatcacaccaataacaaacttgatgtgtggagcaagggataatc 42990656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 53591598 - 53591535
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||| |||||||||| ||  ||||||||| |||||||||||| ||| | ||||||    
T  53591598 ttgttgtgaattcaatgagaaaacacatcaataacaaatttgatgtgtggaacaagggataatc 53591535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 747177 - 747116
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| ||| | ||| |||||||| ||||||||||||||||| | ||||||    
T  747177 tgttgtgaattcgatgaaaaatcacaccaataacaa-cttgatgtgtggagcaagggataatc 747116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 9604447 - 9604508
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| ||||||||||| ||| | ||| |||||||| ||||||||||||||||| ||||||||    
T  9604447 tgttgcgaattcgatgaaaaatcacaccaataacaa-cttgatgtgtggagcaaggaataatc 9604508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 10621365 - 10621418
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  10621365 ttgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaa 10621418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 18096740 - 18096802
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| ||||||||||| |||   ||| |||||||||||||||||||||||||| | ||||||    
T  18096740 tgttgcgaattcgatgaaaaattacaccaataacaaacttgatgtgtggagcaagggataatc 18096802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 36012243 - 36012181
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| ||||||||||| ||| | ||| ||||||||||||||||| |||||||| | ||||||    
T  36012243 tgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtatggagcaagggataatc 36012181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 43226496 - 43226443
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||| ||||||||||||||| | ||| |||||| |||||||||||||||||||    
T  43226496 ttgttgcgaattcgatgagaaatcacaccaataac-aacttgatgtgtggagcaa 43226443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 43421259 - 43421313
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||| ||||||||||| ||| | ||| ||||||||| ||||||||||||||||    
T  43421259 ttgttgcgaattcgatgaaaaatcacaccaataacaaagttgatgtgtggagcaa 43421313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 471
Target Start/End: Complemental strand, 45883350 - 45883304
Alignment:
Q  425 aattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  45883350 aattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaa 45883304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 17795669 - 17795616
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| ||||| ||| ||||||||||||||||    
T  17795669 tgttgtgaattcgatgaaaaatcacaccaataataaatttgatgtgtggagcaa 17795616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 19104109 - 19104056
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| ||||| ||| ||||||||||||||||    
T  19104109 tgttgtgaattcgatgaaaaatcacaccaataataaatttgatgtgtggagcaa 19104056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 471
Target Start/End: Original strand, 25688005 - 25688053
Alignment:
Q  425 aattcgatgagaaaactcact--aataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||||    
T  25688005 aattcgatgagaaaactcacaccaataacaaactttatgtgtggagcaa 25688053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 28181417 - 28181364
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||  | ||| | ||| ||||||||||||||||||||||||||    
T  28181417 tgttgtgaattcgaacaaaaatcacaccaataacaaacttgatgtgtggagcaa 28181364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 28761287 - 28761340
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| ||||| || |||||||||||||||||    
T  28761287 tgttgtgaattcgatgaaaaatcacaccaataataatcttgatgtgtggagcaa 28761340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 38210789 - 38210737
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  38210789 tgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaa 38210737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 50494417 - 50494365
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  50494417 tgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaa 50494365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 53915338 - 53915391
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||| ||||||||||| ||| | ||| ||||||||||||||||| ||||||||    
T  53915338 tgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtatggagcaa 53915391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 1313822 - 1313768
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcact--aataacaaacttgatgtgtggagcaa 471  Q
    ||||| ||||||||||| |||||||||   ||||||||||||||||||||||||||    
T  1313822 tgttgcgaattcgatga-aaaactcacaccaataacaaacttgatgtgtggagcaa 1313768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 22625828 - 22625883
Alignment:
Q  417 ttgttgtgaattcgatgagaaaact-cactaataacaaacttgatgtgtggagcaaa 472  Q
    |||||||||||||| |||||||||  ||| ||||| |||||||||||||||||||||    
T  22625828 ttgttgtgaattcgttgagaaaaccacaccaataa-aaacttgatgtgtggagcaaa 22625883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 28206911 - 28206965
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  28206911 ttgttgtgaattcgatgagaaaacacaccaataacaaacttgatgtgtggagcaa 28206965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 41647356 - 41647302
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||| |||||||    
T  41647356 ttgttgtgaattcgatgagaaaacacaccaataacaaacttgatgtgcggagcaa 41647302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 50078634 - 50078698
Alignment:
Q  417 ttgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||| |||||||||||||||| | ||| |||||||||||||||||||||||||| ||||||||    
T  50078634 ttgttgcgaattcgatgagaaaatcacaccaataacaaacttgatgtgtggagcaaggaataatc 50078698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 18840023 - 18839960
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||| ||||||||    
T  18840023 ttgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaaggaataatc 18839960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 2949079 - 2949141
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  2949079 tgttgtgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaagggataatc 2949141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 16429388 - 16429334
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  16429388 ttgttgtgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaa 16429334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 28998093 - 28998147
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||    
T  28998093 ttgttgtgaattcgaagagaaaacacaccaatgacaaacttgatgtgtggagcaa 28998147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 29003809 - 29003863
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||    
T  29003809 ttgttgtgaattcgaagagaaaacacaccaatgacaaacttgatgtgtggagcaa 29003863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 39932514 - 39932452
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  39932514 tgttgtgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaagggataatc 39932452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 3579431 - 3579483
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  3579431 tgttgtgaattcgatga-aaaacacaccaataacaaacttgatgtgtggagcaa 3579483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 13215518 - 13215465
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||    
T  13215518 tgttgtgaattcgttgagaaaacacaccaataataaacttgatgtgtggagcaa 13215465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 471
Target Start/End: Original strand, 25251123 - 25251174
Alignment:
Q  420 ttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  25251123 ttgtgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaa 25251174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 468
Target Start/End: Original strand, 38925327 - 38925378
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    |||||||||||| ||||||||||| ||| ||||| |||||||||||||||||    
T  38925327 ttgttgtgaatttgatgagaaaacacaccaataataaacttgatgtgtggag 38925378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 3804121 - 3804183
Alignment:
Q  253 tcacatggttctaaagtcaaaatctaaatcgaattagatggatgaagtgcatgttaaaccaaa 315  Q
    |||||||||| |||||||||||| ||||||  |  |||||||||||||||||||||| |||||    
T  3804121 tcacatggttttaaagtcaaaatttaaatcataacagatggatgaagtgcatgttaacccaaa 3804183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 6995539 - 6995593
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||| ||||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  6995539 ttgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaa 6995593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 17319321 - 17319259
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| ||| | ||| ||||||||| ||||||||||||| || ||||||||    
T  17319321 tgttgtgaattcgatgaaaaatcgcaccaataacaaatttgatgtgtggagtaaggaataatc 17319259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 472
Target Start/End: Complemental strand, 18307543 - 18307489
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaa 472  Q
    ||||| ||||||||||||||||  ||  |||||||||||||||||||||||||||    
T  18307543 tgttgcgaattcgatgagaaaatacatcaataacaaacttgatgtgtggagcaaa 18307489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 31422706 - 31422768
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| ||||||||||| ||| | ||  |||||||||||||||||||||||||| ||||||||    
T  31422706 tgttgcgaattcgatgaaaaatcacatcaataacaaacttgatgtgtggagcaaggaataatc 31422768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 39462956 - 39462894
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  39462956 tgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaagggataatc 39462894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 27336782 - 27336846
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcact--aataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||| |||||||| ||||   |||||||||||||||||||||||||| | ||||||    
T  27336782 tgttgtgaattcgttgagaaaaatcacatcaataacaaacttgatgtgtggagcaagggataatc 27336846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 40134378 - 40134325
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||  ||||||||||||||||||||||||||    
T  40134378 tgttgtgaattcgatgaaaaatcacatcaataacaaacttgatgtgtggagcaa 40134325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 3801763 - 3801823
Alignment:
Q  252 ttcacatggttctaaagtcaaaatctaaatcgaattagatggatgaagtgcatgttaaacc 312  Q
    ||||||||||| |||||||||||||||||||  |  ||||||||||| |||||||| ||||    
T  3801763 ttcacatggttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgtttaacc 3801823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 477
Target Start/End: Original strand, 31424861 - 31424921
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaata 477  Q
    |||||| |||||| |||| ||| | ||| |||||||||||||||||||||||||| |||||    
T  31424861 ttgttgcgaattcaatgaaaaatcacaccaataacaaacttgatgtgtggagcaaggaata 31424921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 471
Target Start/End: Original strand, 14097813 - 14097868
Alignment:
Q  416 gttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||| |||||||| || ||||| ||| |||||||||||||||||||| |||||    
T  14097813 gttgttgcgaattcgaagaaaaaacacaccaataacaaacttgatgtgtgaagcaa 14097868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 16226608 - 16226546
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||| ||| | ||| |||||| ||||||||||||||||||| | ||||||    
T  16226608 ttgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaagggataatc 16226546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 480
Target Start/End: Complemental strand, 17324485 - 17324446
Alignment:
Q  441 tcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  17324485 tcaccaataacaaacttgatgtgtggagcaaggaataatc 17324446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 477
Target Start/End: Original strand, 25248398 - 25248457
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaata 477  Q
    ||||||||||||||||| ||| | ||  ||||||||||||||||||||||| || |||||    
T  25248398 tgttgtgaattcgatgaaaaatcacaacaataacaaacttgatgtgtggagtaaggaata 25248457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 9459277 - 9459338
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| ||| | ||| |||||| ||||||||||||||||||| | ||||||    
T  9459277 tgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaagggataatc 9459338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 9463104 - 9463165
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| ||| | ||| |||||| ||||||||||||||||||| | ||||||    
T  9463104 tgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaagggataatc 9463165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 16232002 - 16231941
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| ||| | ||| |||||||| ||||||||||||||||| | ||||||    
T  16232002 tgttgtgaattcgatgaaaaatcacaccaataacaa-cttgatgtgtggagcaacggataatc 16231941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 23618451 - 23618481
Alignment:
Q  252 ttcacatggttctaaagtcaaaatctaaatc 282  Q
    |||||||||||||||||||||||||||||||    
T  23618451 ttcacatggttctaaagtcaaaatctaaatc 23618481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 23649797 - 23649827
Alignment:
Q  252 ttcacatggttctaaagtcaaaatctaaatc 282  Q
    |||||||||||||||||||||||||||||||    
T  23649797 ttcacatggttctaaagtcaaaatctaaatc 23649827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 23735422 - 23735452
Alignment:
Q  252 ttcacatggttctaaagtcaaaatctaaatc 282  Q
    |||||||||||||||||||||||||||||||    
T  23735422 ttcacatggttctaaagtcaaaatctaaatc 23735452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 23816323 - 23816262
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| ||||||||||| ||| | ||| |||||||| ||||||||||||||||| ||||||||    
T  23816323 tgttgcgaattcgatgaaaaatcacaccaataacaa-cttgatgtgtggagcaaggaataatc 23816262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 27338972 - 27339037
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcact--aataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||| |||||||| ||||   |||||||||||||||||||||| ||| | ||||||    
T  27338972 ttgttgtgaattcgttgagaaaaatcacatcaataacaaacttgatgtgtggaacaagggataatc 27339037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 468
Target Start/End: Original strand, 50248417 - 50248467
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    ||||||||||||||||| ||| | ||| ||||||||| |||||||||||||    
T  50248417 tgttgtgaattcgatgataaatcacaccaataacaaatttgatgtgtggag 50248467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 23786278 - 23786226
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  23786278 tgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaa 23786226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 21353196 - 21353252
Alignment:
Q  417 ttgttgtgaattcgatgagaaaact-cactaataacaaacttgatgtgtggagcaaa 472  Q
    ||||| |||||||| |||||||||  ||| |||||||||||||||| ||||||||||    
T  21353196 ttgttatgaattcgttgagaaaaccacaccaataacaaacttgatgcgtggagcaaa 21353252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 50668553 - 50668521
Alignment:
Q  250 ttttcacatggttctaaagtcaaaatctaaatc 282  Q
    |||||||||| ||||||||||||||||||||||    
T  50668553 ttttcacatgcttctaaagtcaaaatctaaatc 50668521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 183310 - 183257
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  183310 tgttgtgaattcgatgagaaaacacaccaataacaaacttgatgtgtggagcaa 183257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 417 - 468
Target Start/End: Complemental strand, 25953011 - 25952960
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  25953011 ttgttgtgaattcgatgagaaaacacaccaataacaaacttgatgtgtggag 25952960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 14419034 - 14419088
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  14419034 ttgttgtgaattcgatgagaaaacacaccaataacaaacttgatgtatggagcaa 14419088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 465
Target Start/End: Original strand, 35872300 - 35872348
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtg 465  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  35872300 ttgttgtgaattcgatgagaaaacacaccaataacaaacttgatgtgtg 35872348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 471
Target Start/End: Complemental strand, 14477742 - 14477687
Alignment:
Q  416 gttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  14477742 gttgttgtgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaa 14477687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 425 - 471
Target Start/End: Original strand, 27106754 - 27106800
Alignment:
Q  425 aattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  27106754 aattcgatgagaaaacacaccaataacaaacttgatgtgtggagcaa 27106800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 468
Target Start/End: Original strand, 37214106 - 37214159
Alignment:
Q  415 agttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    |||||||||||||| ||||||||||| ||| ||||||||||||||||| |||||    
T  37214106 agttgttgtgaatttgatgagaaaacacaccaataacaaacttgatgtatggag 37214159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 39323331 - 39323282
Alignment:
Q  332 cgttcctttaaattccaacagagcacaactaatatgaaagaacaaaatta 381  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| ||||    
T  39323331 cgttcctttaaattccatcggagcacaactaatatgaaagaacaagatta 39323282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 15956444 - 15956390
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||| ||| | ||  ||||||||||||||||||||||||||    
T  15956444 ttgttgtgaattcgatgaaaaatcacatcaataacaaacttgatgtgtggagcaa 15956390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 15073202 - 15073149
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||| ||||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  15073202 tgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaa 15073149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 21482798 - 21482745
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| ||||| ||||||||||||||||||||    
T  21482798 tgttgtgaattcgatgaaaaatcacaccaataataaacttgatgtgtggagcaa 21482745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 28251410 - 28251472
Alignment:
Q  418 tgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| |||| | ||| |||||||| ||||||||||||||||| ||||||||    
T  28251410 tgttgtgaattcgatgaaaaaatcacaccaataacaa-cttgatgtgtggagcaaggaataatc 28251472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 2467780 - 2467833
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||| ||| | ||||||||| ||||||||||| ||||||||    
T  2467780 ttgttgtgaattcgatga-aaatcacactaataataaacttgatgtatggagcaa 2467833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 2467978 - 2468031
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||| ||| | ||| ||||| ||||||||||||||||||||    
T  2467978 ttgttgtgaattcgatga-aaatcacaccaataataaacttgatgtgtggagcaa 2468031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 27827480 - 27827427
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||| ||||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  27827480 ttgttgcgaattcgatga-aaatcacaccaataacaaacttgatgtgtggagcaa 27827427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 468
Target Start/End: Original strand, 33541255 - 33541305
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    ||||||||||||||| | ||| | ||| |||||||||||||||||||||||    
T  33541255 tgttgtgaattcgatcaaaaatcacaccaataacaaacttgatgtgtggag 33541305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 41383155 - 41383101
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||| || |||||||| ||| | ||| ||||||||||||||||||||||||||    
T  41383155 ttgttgcgagttcgatgaaaaaccacaccaataacaaacttgatgtgtggagcaa 41383101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 13858334 - 13858387
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||| |||||||||| ||| | ||| ||||| ||||||||||||||||||||    
T  13858334 tgttgtaaattcgatgaaaaatcacaccaataagaaacttgatgtgtggagcaa 13858387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 24873039 - 24873091
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  24873039 tgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaa 24873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 27829790 - 27829738
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||| ||||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  27829790 tgttgcgaattcgatga-aaatcacaccaataacaaacttgatgtgtggagcaa 27829738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 80306 - 80243
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||  |||||||    
T  80306 ttgttgcgaattcgatgagaaaacacaccaataacaaacttgatgtgtggagcaagtaataatc 80243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 18467124 - 18467061
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||| ||| | |||||||||||||||||||||||||||||| | ||||||    
T  18467124 ttgttgtgaattcgatgaaaaatcacactaataacaaacttgatgtgtggagcaagggataatc 18467061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 20505686 - 20505749
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||  |||||||    
T  20505686 ttgttgtgaattcaatgagaaaacacaccaataacaaacttgatgtgtggagcaagtaataatc 20505749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 6745508 - 6745454
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  6745508 ttgttgcgaattcgatgagaaaacacaccaataacaaacttgatgtgtggagcaa 6745454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 417 - 478
Target Start/End: Original strand, 37705625 - 37705687
Alignment:
Q  417 ttgttgtgaattcgatgagaaaact-cactaataacaaacttgatgtgtggagcaaagaataa 478  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||||||||||| ||||||    
T  37705625 ttgttgtgaattcgatgagaaaaccacaccaataacaaacttgatgtgtggagcaaggaataa 37705687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 16092045 - 16092098
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||    
T  16092045 tgttgtgaattcgatgagaaaacgcaccaataacaaacttgatatgtggagcaa 16092098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 419 - 480
Target Start/End: Original strand, 12555757 - 12555820
Alignment:
Q  419 gttgtgaattcgatgagaaaactcact--aataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||||||||||||   ||||||||| |||||||||||||||| ||||||||    
T  12555757 gttgtgaattcgatgagaaaactcacaccaataacaaatttgatgtgtggagcaaggaataatc 12555820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 424 - 480
Target Start/End: Complemental strand, 21948462 - 21948406
Alignment:
Q  424 gaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||| | ||||||    
T  21948462 gaattcgatgagaaaacacaccaataacaaacttgatgtgtggagcaagggataatc 21948406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 480
Target Start/End: Original strand, 17818338 - 17818397
Alignment:
Q  422 gtgaattcgatgagaaaact-cactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||||| ||||||||    
T  17818338 gtgaattcgatgagaaaaccacaccaataacaaacttgatgtgtggagcaaggaataatc 17818397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 26098128 - 26098193
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcact--aataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||| |||||||||||||||||||||   |||| ||||||||||||||||||||| ||||||||    
T  26098128 ttgttgcgaattcgatgagaaaactcacaccaatatcaaacttgatgtgtggagcaaggaataatc 26098193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 489
Target Start/End: Original strand, 1189454 - 1189523
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatctacccacca 489  Q
    |||||||||||||||||  |||| ||| |||| ||||||||||||||||||||| |||||||| | ||||||    
T  1189454 tgttgtgaattcgatga--aaacacaccaatatcaaacttgatgtgtggagcaaggaataatcaagccacca 1189523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 24127292 - 24127229
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||| ||| | ||| |||||||||||| ||||||||||||| | ||||||    
T  24127292 ttgttgtgaattcgatgaaaaatcacacaaataacaaacttaatgtgtggagcaagggataatc 24127229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 27910873 - 27910810
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||| ||| | ||| ||||||||| |||||||||||||||| | ||||||    
T  27910873 ttgttgtgaattcgatgaaaaatcacaccaataacaaatttgatgtgtggagcaagggataatc 27910810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 480
Target Start/End: Original strand, 36402169 - 36402232
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  36402169 ttgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaagggataatc 36402232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 468
Target Start/End: Complemental strand, 2954849 - 2954799
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    |||| |||||||||||||||||| ||| ||||||||| |||||||||||||    
T  2954849 tgttctgaattcgatgagaaaacacaccaataacaaatttgatgtgtggag 2954799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 6747744 - 6747690
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||| ||||| ||||||||||| ||| ||||||||||||||||||| ||||||    
T  6747744 ttgttgcgaattggatgagaaaacacaccaataacaaacttgatgtgtagagcaa 6747690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 18469448 - 18469386
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| ||| |  || |||||||||||||||||||||||||| | ||||||    
T  18469448 tgttgtgaattcgatgaaaaatcataccaataacaaacttgatgtgtggagcaagggataatc 18469386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 41585579 - 41585633
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||| ||| | ||| ||||||||||||||||||||| ||||    
T  41585579 ttgttgtgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggggcaa 41585633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 471
Target Start/End: Complemental strand, 6756926 - 6756873
Alignment:
Q  419 gttgtgaattcgatgagaaaactcactaataac-aaacttgatgtgtggagcaa 471  Q
    |||| ||||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  6756926 gttgcgaattcgatgagaaaacacaccaataacaaaacttgatgtgtggagcaa 6756873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 10587252 - 10587200
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||    
T  10587252 tgttgtgaattcgatga-aaatcacaccaataacaaacttgatgtgtggagcaa 10587200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 34530559 - 34530612
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| ||||||||||||||||||| ||||||    
T  34530559 tgttgtgaattcgatgaaaaatcacaccaataacaaacttgatgtgtcgagcaa 34530612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 468
Target Start/End: Complemental strand, 27912973 - 27912925
Alignment:
Q  420 ttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    ||||||||||||||| ||| | ||| |||||||||||||||||||||||    
T  27912973 ttgtgaattcgatgaaaaatcccaccaataacaaacttgatgtgtggag 27912925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 473
Target Start/End: Complemental strand, 40221964 - 40221908
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaag 473  Q
    ||||||| |||| ||||| ||| | ||| ||||||||||||||||||||||||||||    
T  40221964 ttgttgtaaatttgatgaaaaatcacaccaataacaaacttgatgtgtggagcaaag 40221908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 658204 - 658265
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| ||||||||||| ||| | ||| ||||||||| |||||||||||||||| ||||||||    
T  658204 tgttgcgaattcgatga-aaatcacaccaataacaaatttgatgtgtggagcaaggaataatc 658265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 696310 - 696256
Alignment:
Q  418 tgttgtgaattcgatgagaaaa-ctcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||||||||||| |  || ||||||| ||||||||||||||||||    
T  696310 tgttgtgaattcgatgagaaaatcataccaataacagacttgatgtgtggagcaa 696256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 446 - 480
Target Start/End: Complemental strand, 16776566 - 16776532
Alignment:
Q  446 aataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||||||||||||||||||||||| ||||||||    
T  16776566 aataacaaacttgatgtgtggagcaaggaataatc 16776532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 18511055 - 18511109
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||| ||||||||||| ||| | ||  ||||||||||||||||||||||||||    
T  18511055 ttgttgcgaattcgatgataaatcacatcaataacaaacttgatgtgtggagcaa 18511109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 20043425 - 20043371
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||| |||| |||||||||| ||  ||||||||||||||| ||||||||||    
T  20043425 ttgttgtggattcaatgagaaaacacatcaataacaaacttgatttgtggagcaa 20043371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 3372977 - 3373029
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  3372977 tgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaa 3373029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 8185914 - 8185854
Alignment:
Q  331 acgttcctttaaattccaacag--agcacaactaatatgaaagaacaaaattattaaaagc 389  Q
    ||||||||||||||||||||||  || | |||| ||||| |||||||||||| ||||||||    
T  8185914 acgttcctttaaattccaacagatagaagaactgatatggaagaacaaaattgttaaaagc 8185854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 39397857 - 39397910
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    |||||||||||||| |||||| | ||| ||| |||||||||| |||||||||||    
T  39397857 tgttgtgaattcgacgagaaatcacaccaattacaaacttgacgtgtggagcaa 39397910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 50458 - 50395
Alignment:
Q  417 ttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    |||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  50458 ttgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaagggataatc 50395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 52456 - 52394
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||| ||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  52456 tgttgcgaattcgatgaaaaatcacaccaataacaaacttgatgtgtggagcaagggataatc 52394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 69133 - 69194
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||    
T  69133 tgttgtgaattcgatga-aaatcacaccaataacaaacttgatgtgtggagcaagggataatc 69194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 471
Target Start/End: Complemental strand, 6648 - 6594
Alignment:
Q  416 gttgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||||||||||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  6648 gttgttgtgaattcgatgaaaaatcacaccaataac-aacttgatgtgtggagcaa 6594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 468
Target Start/End: Complemental strand, 4437 - 4387
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggag 468  Q
    ||||||||||||| || |||||| ||  |||||||||||||||||||||||    
T  4437 tgttgtgaattcgttgtgaaaacacatcaataacaaacttgatgtgtggag 4387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 473 - 412
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaaagaataatc 480  Q
    ||||||||||||| ||||||| | ||| |||||||| ||||||||||||||||| | ||||||    
T  473 tgttgtgaattcgttgagaaatcacaccaataacaa-cttgatgtgtggagcaagggataatc 412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 79631 - 79578
Alignment:
Q  418 tgttgtgaattcgatgagaaaactcactaataacaaacttgatgtgtggagcaa 471  Q
    ||||| |||||| |||| ||| | ||| ||||||||||||||||||||||||||    
T  79631 tgttgcgaattcaatgaaaaatcacaccaataacaaacttgatgtgtggagcaa 79578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University