View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8520_low_11 (Length: 214)

Name: NF8520_low_11
Description: NF8520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8520_low_11
NF8520_low_11
[»] chr1 (4 HSPs)
chr1 (18-196)||(12772895-12773073)
chr1 (49-90)||(24600377-24600418)
chr1 (27-90)||(24448309-24448372)
chr1 (17-90)||(1188651-1188724)
[»] chr2 (7 HSPs)
chr2 (26-90)||(33561514-33561578)
chr2 (25-90)||(2336654-2336719)
chr2 (26-90)||(29873600-29873664)
chr2 (26-71)||(41678449-41678494)
chr2 (26-90)||(962629-962693)
chr2 (26-90)||(29874086-29874150)
chr2 (26-90)||(30323495-30323559)
[»] chr4 (4 HSPs)
chr4 (26-94)||(28034260-28034328)
chr4 (20-90)||(34544131-34544201)
chr4 (26-90)||(15841429-15841493)
chr4 (126-162)||(51318464-51318500)
[»] chr5 (4 HSPs)
chr5 (26-90)||(31509654-31509718)
chr5 (26-90)||(31509762-31509826)
chr5 (47-87)||(6557113-6557153)
chr5 (50-90)||(34103609-34103649)
[»] chr8 (3 HSPs)
chr8 (16-90)||(34218800-34218874)
chr8 (26-84)||(4154350-4154407)
chr8 (26-78)||(4154741-4154793)
[»] chr6 (5 HSPs)
chr6 (25-91)||(34661671-34661737)
chr6 (26-90)||(12092545-12092609)
chr6 (50-90)||(20117209-20117249)
chr6 (29-90)||(8481960-8482021)
chr6 (26-90)||(6071163-6071227)
[»] scaffold0807 (1 HSPs)
scaffold0807 (25-89)||(3108-3172)
[»] chr7 (1 HSPs)
chr7 (49-90)||(34218097-34218138)
[»] chr3 (1 HSPs)
chr3 (26-90)||(47964581-47964645)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 12772895 - 12773073
Alignment:
Q  18 atatcgattagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggttttaggtggagagcgttttaattgttttgc 117  Q
    ||||| ||||||||| | |||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12772895 atatcaattagaaaacttgaggttgaacgctttataagtgagagaatccataaattcattgtcttaaggttttaggtggagagcgttttaattgttttgc 12772994  T
Q  118 cttgtgcagtgttgttctgtctagtacttactgttttgcggatcatacacaccctaagtctcttatgaatcctggatgt 196  Q
    |||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||    
T  12772995 cttgtgcagtgttgttctgtctagtacttaccattttgcggatcaaacacaccctaagtctcttatgaatcctggatgt 12773073  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 24600418 - 24600377
Alignment:
Q  49 ttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    |||||||| |||||||||||||| ||||||||||||||||||    
T  24600418 ttataagtaagagaactcataaactcattgtcttaaggtttt 24600377  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 24448309 - 24448372
Alignment:
Q  27 agaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    ||||||||||| ||| |||  ||||||||||||||  |||||||| ||||||||||||| ||||    
T  24448309 agaaaagtggaagttgaacattttataagtgagagggctcataaactcattgtcttaagatttt 24448372  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 1188724 - 1188651
Alignment:
Q  17 catatcgattagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    |||||||  |||||||||||||||| ||   |||||||||||||  ||||||||| ||||||  ||||||||||    
T  1188724 catatcggatagaaaagtggaggttgaatattttataagtgagaagactcataaactcattgctttaaggtttt 1188651  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 33561578 - 33561514
Alignment:
Q  26 tagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    |||||||||||||||||||| ||||||||||||||| || |||||| ||||||||||||||||||    
T  33561578 tagaaaagtggaggttaaacactttataagtgagaggacccataaactcattgtcttaaggtttt 33561514  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 2336654 - 2336719
Alignment:
Q  25 ttagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    ||||||||||||||||| ||| ||||||||||||||| || |||||||||| || |||||| ||||    
T  2336654 ttagaaaagtggaggttgaacactttataagtgagaggacccataaattcaatgccttaagatttt 2336719  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 29873664 - 29873600
Alignment:
Q  26 tagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    |||||||||||||||| |||  |||||||||| ||| ||||||||| |||||| |||||||||||    
T  29873664 tagaaaagtggaggttgaacattttataagtgggaggactcataaactcattgccttaaggtttt 29873600  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 41678494 - 41678449
Alignment:
Q  26 tagaaaagtggaggttaaacgctttataagtgagagaactcataaa 71  Q
    |||||||| ||||||||||| ||||||||||||||| || ||||||    
T  41678494 tagaaaaggggaggttaaacactttataagtgagaggacccataaa 41678449  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 962629 - 962693
Alignment:
Q  26 tagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    |||||||||  ||||| ||| | ||||||||||||| || ||||||  |||||||||||||||||    
T  962629 tagaaaagtaaaggttgaacaccttataagtgagaggacccataaacccattgtcttaaggtttt 962693  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 29874150 - 29874086
Alignment:
Q  26 tagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    |||||||||||||||| ||| |||||||| || ||| || ||||||  ||||| |||||||||||    
T  29874150 tagaaaagtggaggttgaacactttataattgggaggacccataaacccattgccttaaggtttt 29874086  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 30323495 - 30323559
Alignment:
Q  26 tagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    ||||||| |||||||| ||| ||||| ||||||||| ||  ||||| |||||| |||||||||||    
T  30323495 tagaaaattggaggttgaacactttagaagtgagaggacctataaactcattgccttaaggtttt 30323559  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 28034260 - 28034328
Alignment:
Q  26 tagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggttttaggt 94  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||| | ||||  ||||||||||||||    
T  28034260 tagaaaagtggaggttgaacactttataagtgagagaacccataaacttattgctttaaggttttaggt 28034328  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 34544131 - 34544201
Alignment:
Q  20 atcgattagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    ||||| |||||||||||||||| | | |||||||| |||||| || |||||| |||||| |||||||||||    
T  34544131 atcgaatagaaaagtggaggttgatcactttataaatgagaggacccataaactcattgccttaaggtttt 34544201  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 15841493 - 15841429
Alignment:
Q  26 tagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    |||||||||||||||| ||| |||| |||||||||| | |||||||  ||||| |||||||||||    
T  15841493 tagaaaagtggaggttgaacactttgtaagtgagaggattcataaacacattgccttaaggtttt 15841429  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 51318500 - 51318464
Alignment:
Q  126 gtgttgttctgtctagtacttactgttttgcggatca 162  Q
    |||||| |||||||||||||| |||||||||||||||    
T  51318500 gtgttggtctgtctagtactttctgttttgcggatca 51318464  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 31509654 - 31509718
Alignment:
Q  26 tagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    |||||||||||||||| | | ||||||||||||||| ||||||||| |||||| ||| |||||||    
T  31509654 tagaaaagtggaggttgagcactttataagtgagaggactcataaactcattgccttgaggtttt 31509718  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 31509762 - 31509826
Alignment:
Q  26 tagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    |||||||||||||||| | | ||||||||||||||| ||||||||| |||||| ||| |||||||    
T  31509762 tagaaaagtggaggttgagcactttataagtgagaggactcataaactcattgccttgaggtttt 31509826  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 6557153 - 6557113
Alignment:
Q  47 ctttataagtgagagaactcataaattcattgtcttaaggt 87  Q
    ||||| ||| ||||||||||||||||||||||||| |||||    
T  6557153 ctttacaagcgagagaactcataaattcattgtctcaaggt 6557113  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 34103609 - 34103649
Alignment:
Q  50 tataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    |||||| ||||||||||||||| |||||| |||||||||||    
T  34103609 tataagagagagaactcataaactcattgccttaaggtttt 34103649  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 34218874 - 34218800
Alignment:
Q  16 tcatatcgattagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    ||||||| |||||||||||||| ||| |||  | |||||| |||| ||| ||||||||||||||||||| |||||    
T  34218874 tcatatctattagaaaagtggatgttgaacattatataagagagataacacataaattcattgtcttaaagtttt 34218800  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 4154407 - 4154350
Alignment:
Q  26 tagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaa 84  Q
    |||||||||||||||| ||| ||||||||||||||| || |||||| |||||| |||||    
T  4154407 tagaaaagtggaggttgaacactttataagtgagag-acccataaactcattgccttaa 4154350  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 4154793 - 4154741
Alignment:
Q  26 tagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattg 78  Q
    |||||||||||||||| ||| |||||||||||| || || |||||| ||||||    
T  4154793 tagaaaagtggaggttgaacactttataagtgaaaggacccataaactcattg 4154741  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 34661737 - 34661671
Alignment:
Q  25 ttagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttta 91  Q
    ||||||||||||||||| | | |||||||||| ||||||| |||| ||  |||||||||||||||||    
T  34661737 ttagaaaagtggaggttgatcactttataagtaagagaacccatacatatattgtcttaaggtttta 34661671  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 12092609 - 12092545
Alignment:
Q  26 tagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    |||||||||||||||| | | ||||||||||||||| |  |||||| |||||| |||||||||||    
T  12092609 tagaaaagtggaggttgagcactttataagtgagaggatccataaactcattgccttaaggtttt 12092545  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 20117209 - 20117249
Alignment:
Q  50 tataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    |||||||||||| ||||||||||||| ||||||||||||||    
T  20117209 tataagtgagagtactcataaattcaatgtcttaaggtttt 20117249  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 8481960 - 8482021
Alignment:
Q  29 aaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    ||||||||||||| ||| |||||||| |||||  ||||||||| |||||| |||||| ||||    
T  8481960 aaaagtggaggttgaacactttataaatgagatgactcataaactcattgccttaagatttt 8482021  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 6071163 - 6071227
Alignment:
Q  26 tagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    |||||||||||||||| ||| ||||||||||||||  |  |||||| |||||| |||||| ||||    
T  6071163 tagaaaagtggaggttgaacactttataagtgagatgatccataaactcattgccttaagatttt 6071227  T

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Target: scaffold0807 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 3108 - 3172
Alignment:
Q  25 ttagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggttt 89  Q
    |||||||||||||||||| || ||||||||||||||| |   ||||| |||||| ||||||||||    
T  3108 ttagaaaagtggaggttatacactttataagtgagagcatcaataaactcattgccttaaggttt 3172  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 34218138 - 34218097
Alignment:
Q  49 ttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    ||||||||||||| |||||||||  |||||||||||||||||    
T  34218138 ttataagtgagaggactcataaacccattgtcttaaggtttt 34218097  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 47964645 - 47964581
Alignment:
Q  26 tagaaaagtggaggttaaacgctttataagtgagagaactcataaattcattgtcttaaggtttt 90  Q
    |||||| ||||||||| |||||| |||||||||||| || ||||||   |||| |||||||||||    
T  47964645 tagaaatgtggaggttgaacgctatataagtgagaggacccataaacctattgccttaaggtttt 47964581  T

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