View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8520_low_14 (Length: 209)
Name: NF8520_low_14
Description: NF8520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8520_low_14 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 44949511 - 44949684
Alignment:
| Q |
1 |
actataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttacc |
100 |
Q |
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| T |
44949511 |
actataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatcttcgttttgaatgttaggaacttcctttacc |
44949610 |
T |
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| Q |
101 |
atactatacttttctacaagtgcctttagggatttattcaacacagtagtaggaaggtttatttctctattcat |
174 |
Q |
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| T |
44949611 |
atactatacttttctacaagtgcctttagggatttattcaacacagtagtaggaaggtttatttctctattcat |
44949684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 44943742 - 44943804
Alignment:
| Q |
61 |
ctttatatctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
123 |
Q |
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| T |
44943742 |
ctttatacctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
44943804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 6470364 - 6470464
Alignment:
| Q |
5 |
taaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttaccatac |
104 |
Q |
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||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||||| ||||||||| |||| ||||| |||||||||||||| |
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| T |
6470364 |
taaaaatgcccaccagttatatccttcgaaggctcaaattctgttcccatgtagatctttatacctttgtttttaatggaaggaagttcctttaccatac |
6470463 |
T |
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| Q |
105 |
t |
105 |
Q |
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| T |
6470464 |
t |
6470464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 419320 - 419220
Alignment:
| Q |
5 |
taaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttaccatac |
104 |
Q |
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||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||||| ||||||||| |||| ||||| |||||||||||||| |
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| T |
419320 |
taaaaatgcccaccagttatatccttcgaaggctcaaattctgttcccatgtagatctttatacctttgtttttaatggaaggaagttcctttaccatac |
419221 |
T |
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| Q |
105 |
t |
105 |
Q |
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| T |
419220 |
t |
419220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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