View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8520_low_15 (Length: 204)
Name: NF8520_low_15
Description: NF8520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8520_low_15 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 26003167 - 26002964
Alignment:
| Q |
1 |
tcaattttgagaactttggtctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaaacagcaagagatccttggattctcc |
100 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26003167 |
tcaattctgagtactttggtctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaaacagcaagagatccttggattctcc |
26003068 |
T |
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| Q |
101 |
aaacaccgcggcacatatcgacatatcctccctacaatacaaatttcaaatcaattggttaaacaacttaattaaacacttatagcataaatacttatgt |
200 |
Q |
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| T |
26003067 |
aaacaccgcggcacatatcgacatatcctccctacaatacaaatttcaaatcaattggttaaacaacttaattaaacacttatagcataaatacttatgt |
26002968 |
T |
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| Q |
201 |
attt |
204 |
Q |
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|||| |
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| T |
26002967 |
attt |
26002964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 26017913 - 26017764
Alignment:
| Q |
1 |
tcaattttgagaactttggtctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaaacagcaagagatccttggattctcc |
100 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26017913 |
tcaattctgagtactttggtctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaaacagcaagagatccttggattctcc |
26017814 |
T |
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| Q |
101 |
aaacaccgcggcacatatcgacatatcctccctacaatacaaatttcaaa |
150 |
Q |
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| T |
26017813 |
aaacaccgcggcacatatctacatatcctccctacaaaataaatttcaaa |
26017764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 20874486 - 20874449
Alignment:
| Q |
155 |
ttggttaaacaacttaattaaacacttatagcataaat |
192 |
Q |
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| T |
20874486 |
ttggataaacaacttaattaagcacttatagcataaat |
20874449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 30374408 - 30374271
Alignment:
| Q |
12 |
aactttggtctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcgg |
111 |
Q |
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|||||| ||||| || || ||| |||| ||||||||| ||||| |||||||| | ||||| ||||||||||||||||| || |||||||||||||| |
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| T |
30374408 |
aactttagtctcgggctccgctgtcacccattgtttcaagtgtcggtctccaattcctcttgatacagcaagagatccttgaatcctccaaacaccgcga |
30374309 |
T |
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| Q |
112 |
cacatatcgacatatcctccctacaatacaaatttcaa |
149 |
Q |
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|| | ||| ||||| || |||| ||| ||||||||||| |
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| T |
30374308 |
cataaatcaacataaccaccctgcaagacaaatttcaa |
30374271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 4855597 - 4855645
Alignment:
| Q |
155 |
ttggttaaacaacttaattaaacacttatagcataaatacttatgtatt |
203 |
Q |
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|||| ||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
4855597 |
ttggataaacaacttaattaaatacttatagcataagtacttatgtatt |
4855645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 2221849 - 2221884
Alignment:
| Q |
155 |
ttggttaaacaacttaattaaacacttatagcataa |
190 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
2221849 |
ttggataaacaacttaattaaacacttatagcataa |
2221884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 52013786 - 52013824
Alignment:
| Q |
160 |
taaacaacttaattaaacacttatagcataaatacttat |
198 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
52013786 |
taaacaacttaattaaacgtttatagcataaatacttat |
52013824 |
T |
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