View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8520_low_2 (Length: 471)
Name: NF8520_low_2
Description: NF8520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8520_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Original strand, 48644721 - 48645166
Alignment:
| Q |
17 |
aagaggaacatgcaccgtcttgatgctacggaggtggtgcttaaggagaaaacgtgggaggaatgtgttttgacaaagagtcttaggattgttcacaagt |
116 |
Q |
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| T |
48644721 |
aagaggaacatgcaccgtcttgatgctacggaggtggtgcttaaggagaaaacttgggaggattgtgttttgacaaagagtcttaggattgttcacaagt |
48644820 |
T |
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| Q |
117 |
ttctatacgatgattgttcagtacgtgttagaaatggtggtggaagtggtggtggtttagttgtgcctgcaaatattggttctgccacggtggcaacagc |
216 |
Q |
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| T |
48644821 |
ttctatacgatgattgttcagtgcgtgttagaaatggtggtggaagtggtggtggtttagttgtgcctgcaaatattggttctgccacggtggcaacagc |
48644920 |
T |
|
| Q |
217 |
agtaacccattagaggtagggtcgagccagcaagagaagaatcaaaaatattatatagatcaaaccacaccactgacattacaatatttgacatttcaca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48644921 |
agtaacccattagaggtagggtcgagccagcaagagaagaatcaaaaatattatatagatcaaaccacaccactgacattacaatatttgacatttcaca |
48645020 |
T |
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| Q |
317 |
tatannnnnnnnnnnnnnnnnnncaccccactccccttcgttagagtcatgtcattttagtaaaggcttacttgtatacttactagcagttgctatacat |
416 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48645021 |
tatatttttttattttttgttttcaccccactccccttcgttagagtcatgtcattttagtaaaggcttacttgtatacttactagcagttgctatacat |
48645120 |
T |
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| Q |
417 |
atatataatgtcttgtttgattaaaactattggacagttttcatct |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48645121 |
atatataatgtcttgtttgattaaaactattggacagttttcatct |
48645166 |
T |
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