View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8520_low_3 (Length: 369)
Name: NF8520_low_3
Description: NF8520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8520_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 105 - 315
Target Start/End: Complemental strand, 6031569 - 6031359
Alignment:
| Q |
105 |
aattgtctatctctagcttaattaattaagttaatcacattatctaggtcatattctgcagctcttcagtttcaaaaacgccttttttctccttaaattt |
204 |
Q |
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| T |
6031569 |
aattgtctatctcttgcttagttaattaagttaatcagattatctaggtcatattctgcagctcttcagtttcaaaaacgccttttttctccttaaattt |
6031470 |
T |
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| Q |
205 |
tcgaacccttggctcagaaacatgcccgacttttatagaactaagttatgtaacataaaaatcgtgccccgattttcgttgaattaaaaagcgcaaagtc |
304 |
Q |
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| T |
6031469 |
tcgaacccttggctcataaacatggccgacttttatagaattaagttctgtaacataaaaatcgtgccccgattttcttcgaattaaaaagtggaaagtc |
6031370 |
T |
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| Q |
305 |
tcctcaaaatc |
315 |
Q |
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| T |
6031369 |
tcctcaaaatc |
6031359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 6035787 - 6035697
Alignment:
| Q |
17 |
aagtattgctccgtgtttatacacaacctatcatcccaaaaggtttccaatccgctcttaacctcacatagattattcatcaagaaaaaat |
107 |
Q |
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| T |
6035787 |
aagtattgctccgtgtatatacacaacctatcatcccaaaaggtttccaatccgctcttaacctcacatagattattcatcaagaaaaaat |
6035697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 2718976 - 2718839
Alignment:
| Q |
177 |
caaaaacgccttttttctccttaaattttcgaacccttggctcagaaacatgcccgacttttatagaactaagttatgtaacataaaaatcgtgccccga |
276 |
Q |
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| T |
2718976 |
caaaaacgccttttt-ctcctcaaaattttgaacccttggctcagaaatacgcatggcttttatagaattagtttctgtaacgtaaaaatcatgccttga |
2718878 |
T |
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| Q |
277 |
ttttcgttgaattaaaaagcgcaaagtctcctcaaaatc |
315 |
Q |
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| T |
2718877 |
ttttcgtctaattaaaaagctcaaaatttcatcaaaatc |
2718839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 2719364 - 2719329
Alignment:
| Q |
105 |
aattgtctatctctagcttaattaattaagttaatc |
140 |
Q |
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| T |
2719364 |
aattgtctatctctagcttaattaattaagttaatc |
2719329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 31402946 - 31402883
Alignment:
| Q |
44 |
ctatcatcccaaaaggtttccaatccgctcttaacctcacatagattattcatcaagaaaaaat |
107 |
Q |
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| T |
31402946 |
ctattatcccaaaaggtttccaatcttcccttaatgtgacatagattgttcatcaagaaaaaat |
31402883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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