View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8520_low_6 (Length: 307)
Name: NF8520_low_6
Description: NF8520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8520_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 20362475 - 20362757
Alignment:
| Q |
7 |
tttggtgttatcaagttaacaaaaaatctgccattgtgccactatccttcacaaattggccacacggctgtnnnnnnnnnnnnnnnnntctgccactgca |
106 |
Q |
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| T |
20362475 |
tttggtgttatcaagttaacaaaaaatctgcccttgtgccactatccttcacaaattggccacacggctgtaaaaaaataaaaataaatctgccactgca |
20362574 |
T |
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| Q |
107 |
atcgtccatggcactagttgaaaatactcctagctggtggtaaattagggaaattgtgttcttgttagggaccatgaggaaatagaccccatttttggaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20362575 |
atcgtccatggcactagttgaaaatactcctagctggtggtaaattagggaaattgtgtttttgttagggaccatgaggaaatagaccccatttttggaa |
20362674 |
T |
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| Q |
207 |
tgtttatcatagtaaacgtttcaaggggcactgttaagctgggaaatgaaggagagtagtggcattaggtgcaagggtaatgt |
289 |
Q |
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| T |
20362675 |
tgtttatcatagtaaacgtttcaaggggcactgttaagctgggaaatgaaggagagtagtggcattaggtgcaagggtaatgt |
20362757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 21550214 - 21550472
Alignment:
| Q |
23 |
taacaaaaaatctgccattgtgccactatccttcacaaattggccacacggctgtnnnnnnnnnnnnnnnnntctgccactgcaatcgtccatggcacta |
122 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| |
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| T |
21550214 |
taacaaaaaatctgccctggtgccactatccttcacaaattggccacacggttgtaaaaaaaaaa-------tccgccactgcaatcgtccatggcacta |
21550306 |
T |
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| Q |
123 |
gttgaaaatactcctagctggtggtaaattagggaaattgtgttcttgttagggaccatgaggaaatagaccccatttttggaatgtttatcatagtaaa |
222 |
Q |
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| T |
21550307 |
gttgaaaatactctt-gctggtggtaaattagggaaattgtgtttttgttagggaccatgaggaaatagaccccatttttggaatgtttatcttagtaaa |
21550405 |
T |
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| Q |
223 |
cgtttcaaggggcactgttaagctgggaaatgaaggagagtagtggcattaggtgcaagggtaatgt |
289 |
Q |
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| T |
21550406 |
cgtttcaaggggcactgttaagctgggaaatgagggagagtagtggcattaggtgcgagggtaatgt |
21550472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 171 - 289
Target Start/End: Original strand, 32194831 - 32194949
Alignment:
| Q |
171 |
ttagggaccatgaggaaatagaccccatttttggaatgtttatcatagtaaacgtttcaaggggcactgttaagctgggaaatgaaggagagtagtggca |
270 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32194831 |
ttagggaacatgaggaaatagaccccatttttggaatgtttatcatagtaaacgtttcaaggggcactgttaagctggggaatgaaggagagtagtggca |
32194930 |
T |
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| Q |
271 |
ttaggtgcaagggtaatgt |
289 |
Q |
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|||||||| | |||||||| |
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| T |
32194931 |
ttaggtgcgacggtaatgt |
32194949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 32194771 - 32194838
Alignment:
| Q |
95 |
tctgccactgcaatcgtccatggcactagttgaaaatactc----ctagctggtggtaaattagggaa |
158 |
Q |
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||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
32194771 |
tcttccactgcaatcgtccatggcactagttaaaaatactcctagctagctggtggtaaattagggaa |
32194838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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