View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_high_13 (Length: 448)
Name: NF8521A_high_13
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 23 - 426
Target Start/End: Original strand, 2395944 - 2396347
Alignment:
| Q |
23 |
cattcttcttaacttagagatactactcttttgaggttcatgactgccaagttttccataggtcattccatcccattttagccaggttgtgaggagtgaa |
122 |
Q |
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|||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2395944 |
cattcttcttaacttacaaatactactcttttgaggttcttgactgccaagttttccataggtcattccatcccattttagccaggttgtgaggagtgaa |
2396043 |
T |
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| Q |
123 |
aatactttcaaaatcgctctttaaacatactagtttgctcttatgcacccttaaattatcattttaccccaaacggcagttaactgccgttctaatttca |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2396044 |
aatactttcaaaatcgctctttaaacatactagtttgctcttatgcacccttaaattatcattttaccccaaacggcagttaactgccgttttaatttca |
2396143 |
T |
|
| Q |
223 |
attttacagctttaaatcaaaatatgcattgttcaaaagatcccattgaatttagatataagcgaaaattccaattctaatagataacacaacaatggaa |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||| |
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| T |
2396144 |
attttacagctttaaatcaaaatatgcattgttcaaaagaccccattaaatttagatataagtgaaaatcccaattataatagataacacaacaatggaa |
2396243 |
T |
|
| Q |
323 |
ttccataatagttggatatcatcaacaccattgtgcaagatgaaattacacaatacatgttcttttagggaacatgaatctttcatgtcatgtatgaata |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
2396244 |
ttccataatagttggatatcatcaacaccattgtgcaagatgaaattacacagcacatgtttttttagggaacatgaacctttcatgtcatgtatgaata |
2396343 |
T |
|
| Q |
423 |
cctt |
426 |
Q |
| |
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|||| |
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| T |
2396344 |
cctt |
2396347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 85 - 300
Target Start/End: Original strand, 2390071 - 2390287
Alignment:
| Q |
85 |
tcattccatcccattttagccaggttgtgaggagtgaaaatactttcaaaatcgctctttaaacatactagtttgctcttatgcacccttaaattatcat |
184 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||| ||||| | ||||| || | ||||||||| || |||||| ||||||| || |
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| T |
2390071 |
tcattccatcccattttagctatgttgtgaggagtgaaaatactttgaaaattgtgctttaggcagtttggtttgctctcatccaccctaaaattattat |
2390170 |
T |
|
| Q |
185 |
tttaccccaaacggcagttaactgccgttctaatttcaattttacagctttaaatcaaaatatgcattgttcaaaaga-tcccattgaatttagatataa |
283 |
Q |
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|||||| | ||||||| |||| | |||||| |||| || | |||||||||||||| |||||| ||||||||| | |||||| |||||| |||| |
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| T |
2390171 |
tttacctccaacggcatttaaatatcgttctgattttaagactttgactttaaatcaaaatgtgcattattcaaaagattaccattggctttagacataa |
2390270 |
T |
|
| Q |
284 |
gcgaaaattccaattct |
300 |
Q |
| |
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|| |||| |||||||| |
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| T |
2390271 |
gcataaatcccaattct |
2390287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 2389678 - 2389736
Alignment:
| Q |
31 |
ttaacttagagatactactcttttgaggttcatgactgccaagttttccataggtcatt |
89 |
Q |
| |
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||||||||| ||||||||||||||||| ||| | ||||||||||||| ||| ||||||| |
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| T |
2389678 |
ttaacttagggatactactcttttgagtttcgtaactgccaagtttttcattggtcatt |
2389736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 26576541 - 26576643
Alignment:
| Q |
277 |
gatataagcgaaaattccaattctaatagataacacaacaatggaattccataatagttggatatcatcaacaccattgtgcaagatgaaattacacaat |
376 |
Q |
| |
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||||||||| ||||| ||||||| |||||||||| |||||| |||||| || |||||||| |||||||||||||||||||||||| || ||||||||| | |
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| T |
26576541 |
gatataagc-aaaatcccaattccaatagataactcaacaacggaatttcagaatagttg-atatcatcaacaccattgtgcaaggtgcaattacacagt |
26576638 |
T |
|
| Q |
377 |
acatg |
381 |
Q |
| |
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||||| |
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| T |
26576639 |
acatg |
26576643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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