View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_high_16 (Length: 428)
Name: NF8521A_high_16
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 376
Target Start/End: Complemental strand, 9396669 - 9396305
Alignment:
| Q |
9 |
gattatactgtgtactatcgacttcataattgtaggtttgagaattgttttcataaattaaagaagttttgtgattattgttttgtctgctatagtcgac |
108 |
Q |
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| T |
9396669 |
gattatacgatgtattatcgacttcataattgtaggtttgagaattgttttcataaattaaagaagttttgtgattattgttt-gtctgctatagtcgac |
9396571 |
T |
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| Q |
109 |
gtgtgagacagaagagaaacaatttaatgaataagttacacatcatggactactctatcactttttctgtaatcacaatattgagagtgctcgtgtaact |
208 |
Q |
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| T |
9396570 |
gtgtgaga--gaagagaaacaatttaatgaataaggtaaacatcatggactactcaatcactttttttgtaatcacaatattgagagtgctcgtgtaagt |
9396473 |
T |
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| Q |
209 |
gctttagcacacatgacttgatgatttcacaagcaggaagattattatatatttttcggaaaggatgtgtggag-ttttttggcatacctttcgaaaaac |
307 |
Q |
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| T |
9396472 |
gctttagcacac--gacttgatgatttcacaagcaggaagattattatatatttttcgaaaaggatgtgtgaagtttttttggcatacctttcgaaaaac |
9396375 |
T |
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| Q |
308 |
taaagataaatgtt-tgggaaaattttggaaatgtattataggatgaataaagtggaaatacatatctgg |
376 |
Q |
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| T |
9396374 |
taaagatgaatgttctgggaaaattttggaaatgtattataggatgaataaagtggaaatacatacctgg |
9396305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 374 - 428
Target Start/End: Complemental strand, 9391172 - 9391118
Alignment:
| Q |
374 |
tggaaaaatatcacgtggggtgaacttgaatggaaaatgttaaaattgagggtga |
428 |
Q |
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| T |
9391172 |
tggaaaaatatcacgtggggtgaacttgaatggaaaatgttaaaattgagggtga |
9391118 |
T |
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