View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_high_19 (Length: 384)
Name: NF8521A_high_19
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_high_19 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 22 - 384
Target Start/End: Original strand, 43061800 - 43062162
Alignment:
| Q |
22 |
catgatggtataacatgtttaacaatgaatgaataaacaaataacaaatttcatcgcaaatcattagaattacagaaaagaaatatttggtaactaaaat |
121 |
Q |
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| T |
43061800 |
catgatggtataacatgtttaacaatgaatgaataaacaaataaaaaatttcatcgcaaatcattagaattacagaaaagaaatatttggtaactaaaat |
43061899 |
T |
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| Q |
122 |
aaaattctacgtatgcaaataccgtaggtagaacctagaacacaacattgcatttgtcgggcaaaacccgggtgaaggtaaaggttgcattattgtttaa |
221 |
Q |
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| T |
43061900 |
aaaattctacgtatgcaaataccgtaggtagaacctagaacacaacattgcatttttcgggcaaaacccgggtgaaggtaaaggttgcattattgtttga |
43061999 |
T |
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| Q |
222 |
tttcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatag |
321 |
Q |
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| T |
43062000 |
tttcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatag |
43062099 |
T |
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| Q |
322 |
ataccataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgagtacc |
384 |
Q |
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| T |
43062100 |
ataccataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgagtacc |
43062162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 380
Target Start/End: Original strand, 43054751 - 43054907
Alignment:
| Q |
224 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
323 |
Q |
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| T |
43054751 |
tcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaacctaatcctaaagtagagcttcacatagat |
43054850 |
T |
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| Q |
324 |
accataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgag |
380 |
Q |
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| T |
43054851 |
atcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgag |
43054907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 380
Target Start/End: Original strand, 43049217 - 43049373
Alignment:
| Q |
224 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
323 |
Q |
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| T |
43049217 |
tcaaaggaactttgaagtcacatttcaccttaggcttgtaatcacccgatatcaaatccccaagtctgaacctaatcctaaagtaaagcctcacatagat |
43049316 |
T |
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| Q |
324 |
accataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgag |
380 |
Q |
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| T |
43049317 |
atcataaacttcatcactcttgtctttgttaaactcggagacttgatcgctgtcgag |
43049373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 303 - 380
Target Start/End: Original strand, 43024145 - 43024222
Alignment:
| Q |
303 |
gaagtagagcttcacatagataccataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgag |
380 |
Q |
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| T |
43024145 |
gaagtagagtttcacatagatatcataaacttcaacactcttatctttgttaaactcagagacttgattattgtcgag |
43024222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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