View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_high_29 (Length: 339)
Name: NF8521A_high_29
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_high_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 38856752 - 38856433
Alignment:
| Q |
9 |
tggtgttatacatacgattatgtcatcctagcacaaccatattaacaagtttcgcagctgatttggccaaagagaataatgaacaacacacaggctgtaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38856752 |
tggtgttatacatacgattatgtcatcctagcacaaccatattaacaagtttcgcagctgatttggccaaagagaataatgaacaacacataggctgtaa |
38856653 |
T |
|
| Q |
109 |
attgtcttttgctgacatgctttatctctccatttggctgataagactgtttgcaactaaatacataaaatcaaatcactttcaatttcttctcctttct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38856652 |
attgtcttttgctgacatgctttatctctccatttggctgataagactgtttgcaactaaatacataaaatcaaatcactttcaatttcttctcctttct |
38856553 |
T |
|
| Q |
209 |
atttttaatctcacaagaggttctgtgtatgtgagaaaaagatgcctatgaaaagctataattgtgaagatttgtgttaggtgactgttaattaatgaag |
308 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
38856552 |
atttttaatctcacaagagtttctgtgtatgtgagaaaaagatgcctatgaaaagctataattgtgaagatttgtgttaggtgactg----taaatgaag |
38856457 |
T |
|
| Q |
309 |
agttttgggttttatggttcttga |
332 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38856456 |
agttttgggttttatggttcttga |
38856433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 37689990 - 37689907
Alignment:
| Q |
9 |
tggtgttatacatacgattatgtcatcctagcacaaccatattaacaagtttcgcagctgatttggccaaagagaataatgaac |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37689990 |
tggtgttatacatacgattatgtcatcctagcacaaccatattaacaagtttcggagctgatttggccaaagagaataatgaac |
37689907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 37689823 - 37689741
Alignment:
| Q |
106 |
taaattgtcttttgctgacatgctttatctctccatttggctgataagactgtttgcaactaaatacataaaatcaaatcact |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37689823 |
taaattgtcttttgctgacatgctttatctctccatttggctgataagactgcttgcaactaaatacataaaatcaaatcact |
37689741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University