View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_high_35 (Length: 298)
Name: NF8521A_high_35
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 42888337 - 42888615
Alignment:
| Q |
1 |
aagtggtttttcttagtcaacgagaatcaatgaacaagttctttgataaaaggatcgattaagtcctacctctagtatataattttgtatattatgtgtg |
100 |
Q |
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| T |
42888337 |
aagtggtttttcttagtcaacgagaatcaatgaacaagttctttgataaaaggatcgattaattcctacctctagtatataattttgtatattatgtgtg |
42888436 |
T |
|
| Q |
101 |
tattcgtacgtaaaatattgaatgtaaatatgagaccatcgctacgatcaactcagctaaaataagtcaaaaacacttaaaacagtcatcgaaaacataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42888437 |
tattcgtacgtaaaatattgaatgtaaatatgagaccatcgctacgatcaactcagctaaaataagtcaaaaacactaaaaacagtcatcgaaaacataa |
42888536 |
T |
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| Q |
201 |
tttgacttggggttccatcttatcagaatcc------atggtggagtgcaaatgtagacaaagatattttcaagtctga |
273 |
Q |
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| T |
42888537 |
tttgacttggggttccatcttatcagaatccatggtgatggtggagtgcaaatgtagacaaagatattttcaagtctga |
42888615 |
T |
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