View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8521A_high_4 (Length: 601)
Name: NF8521A_high_4
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_high_4 |
 | |
|
| [»] scaffold0011 (2 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0011 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 116 - 593
Target Start/End: Complemental strand, 138988 - 138508
Alignment:
| Q |
116 |
tctcaagctcacataaggtgacaacaatttcattctgcaatgctcacaacttctcaggattgatgactttgctacatatagccttgaagaaaaaacatag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | || |||||||||||| | || ||||||||| | ||||| |||||||| ||||| || |
|
|
| T |
138988 |
tctcaagctcacataaggtgacaacaatttcattttgtagtgtcggcaacttctcagggtcaataactttgctagaaatagctttgaagaagaaacaaag |
138889 |
T |
|
| Q |
216 |
tttagttatggtccatctcaccttttcaggcaaaatggaacgtatacctattggcagaaaattctccattataacatgacaatcatgggactttgtaccc |
315 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||| | ||||| ||||||||| |||||| |||||||| ||| || |||||| |||| |
|
|
| T |
138888 |
tttagttatggtccatcgcacattttcaggcaaaatggaacgtatagcaattggaagaaaattccccattaaaacatgaccatcgtgagactttaaaccc |
138789 |
T |
|
| Q |
316 |
tttaacttgagatccttcatacaaaccaatctcttaatgtttgaggagaacccctctggaactttaactccatgaagaaaattacaaagaataattttct |
415 |
Q |
| |
|
||||| ||||||||||||||| | ||||| |||||||||||||| ||| | ||||||||||||||||| |||||||| ||||||| || |||||| |
|
|
| T |
138788 |
tttaatttgagatccttcatagataccaagctcttaatgtttgaagagtaaccctctggaactttaacattgtgaagaaacttacaaaagatctttttct |
138689 |
T |
|
| Q |
416 |
cttttcttgagagagtatgagccgctggcggtagaaatgtacgatccc---ccttcttaacaggcctcaactcacttcttattcccattttttccatgtc |
512 |
Q |
| |
|
|||||||||| | ||||||||| ||||| |||||||||||||| | || |||||||||| ||||||| ||| | |||| |||||| ||| |||||| |
|
|
| T |
138688 |
cttttcttgacaaagtatgagctgctggaggtagaaatgtacgcttcccatccttcttaaccggcctcagttcattccttaatcccatactttgcatgtc |
138589 |
T |
|
| Q |
513 |
taaccttgcattgatgccatccttggactttcctgacacattgagtaatgtacaaatgacattatcgaacacatatttttc |
593 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | |||||||||||||| || |||| |||| || |||| |||||| |
|
|
| T |
138588 |
taaccttgcattgatgccatccttagactttcctggtatattgagtaatgtaccaacgacactatcaaaaacatttttttc |
138508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 490 - 565
Target Start/End: Complemental strand, 143835 - 143760
Alignment:
| Q |
490 |
cttattcccattttttccatgtctaaccttgcattgatgccatccttggactttcctgacacattgagtaatgtac |
565 |
Q |
| |
|
|||| |||||| ||| |||||||||||||||||||||||||||||| |||||||||| | |||||||||||||| |
|
|
| T |
143835 |
cttaatcccatactttgcatgtctaaccttgcattgatgccatccttagactttcctggtatattgagtaatgtac |
143760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 116 - 593
Target Start/End: Complemental strand, 20750115 - 20749635
Alignment:
| Q |
116 |
tctcaagctcacataaggtgacaacaatttcattctgcaatgctcacaacttctcaggattgatgactttgctacatatagccttgaagaaaaaacatag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | || |||||||||||| | || ||||||||| | ||||| |||||||| ||||| || |
|
|
| T |
20750115 |
tctcaagctcacataaggtgacaacaatttcattttgtagtgtcggcaacttctcagggtcaataactttgctagaaatagctttgaagaagaaacaaag |
20750016 |
T |
|
| Q |
216 |
tttagttatggtccatctcaccttttcaggcaaaatggaacgtatacctattggcagaaaattctccattataacatgacaatcatgggactttgtaccc |
315 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||| | ||||| ||||||||| |||||| |||||||| ||| || |||||| |||| |
|
|
| T |
20750015 |
tttagttatggtccatcgcacattttcaggcaaaatggaacgtatagcaattggaagaaaattccccattaaaacatgaccatcgtgagactttaaaccc |
20749916 |
T |
|
| Q |
316 |
tttaacttgagatccttcatacaaaccaatctcttaatgtttgaggagaacccctctggaactttaactccatgaagaaaattacaaagaataattttct |
415 |
Q |
| |
|
||||| ||||||||||||||| | ||||| |||||||||||||| ||| | ||||||||||||||||| |||||||| ||||||| || |||||| |
|
|
| T |
20749915 |
tttaatttgagatccttcatagataccaagctcttaatgtttgaagagtaaccctctggaactttaacattgtgaagaaacttacaaaagatctttttct |
20749816 |
T |
|
| Q |
416 |
cttttcttgagagagtatgagccgctggcggtagaaatgtacgatccc---ccttcttaacaggcctcaactcacttcttattcccattttttccatgtc |
512 |
Q |
| |
|
|||||||||| | ||||||||| ||||| |||||||||||||| | || |||||||||| ||||||| ||| | |||| |||||| ||| |||||| |
|
|
| T |
20749815 |
cttttcttgacaaagtatgagctgctggaggtagaaatgtacgcttcccatccttcttaaccggcctcagttcattccttaatcccatactttgcatgtc |
20749716 |
T |
|
| Q |
513 |
taaccttgcattgatgccatccttggactttcctgacacattgagtaatgtacaaatgacattatcgaacacatatttttc |
593 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | |||||||||||||| || |||| |||| || |||| |||||| |
|
|
| T |
20749715 |
taaccttgcattgatgccatccttagactttcctggtatattgagtaatgtaccaacgacactatcaaaaacatttttttc |
20749635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 15030194 - 15030271
Alignment:
| Q |
22 |
aaaaagtatttttagagcctttttaatgttactatgttaaaagacatattgcctttactttttactcttttaaatctg |
99 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15030194 |
aaaaagtatttttaaagcctttttaatgttactatgttaaaagacatattgcctttactttttactcttttaaatctg |
15030271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 167 - 455
Target Start/End: Original strand, 14651710 - 14651998
Alignment:
| Q |
167 |
tctcaggattgatgactttgctacatatagccttgaagaaaaaacatagtttagttatggtccatctcaccttttcaggcaaaatggaacgtatacctat |
266 |
Q |
| |
|
|||| |||||||| ||||| ||||| || ||| ||||||| ||||| |||||||| || | | ||| || ||||||||||||||||||||||||||||| |
|
|
| T |
14651710 |
tctctggattgatcactttactacaaatcgccctgaagaagaaacaaagtttagtgattgcacttctaacgttttcaggcaaaatggaacgtatacctat |
14651809 |
T |
|
| Q |
267 |
tggcagaaaattctccattataacatgacaatcatgggactttgtaccctttaacttgagatccttcatacaaaccaatctcttaatgtttgaggagaac |
366 |
Q |
| |
|
||| | | | ||||| | |||||| |||||||| ||||| |||| ||| |||||| || |||||| | ||||| | |||||||||| ||| || |
|
|
| T |
14651810 |
tggtaacatgtgttccatcaaaacatggcaatcatgagacttcaaaccccttatcttgaggtctttcatagataccaaattactaatgtttgatgagtac |
14651909 |
T |
|
| Q |
367 |
ccctctggaactttaactccatgaagaaaattacaaagaataattttctcttttcttgagagagtatgagccgctggcggtagaaatgt |
455 |
Q |
| |
|
|| ||||||||||||||| |||||||||| | ||| | | ||||||| |||||||| | |||||||||||| || |||| |||||| |
|
|
| T |
14651910 |
ccttctggaactttaacttcatgaagaaactgacacaatacttttttctcctttcttgataaagtatgagccgcaggtggtaaaaatgt |
14651998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 173 - 455
Target Start/End: Original strand, 128756 - 129038
Alignment:
| Q |
173 |
gattgatgactttgctacatatagccttgaagaaaaaacatagtttagttatggtccatctcaccttttcaggcaaaatggaacgtatacctattggcag |
272 |
Q |
| |
|
||||||| ||||| ||||| || ||| ||||||| ||||| |||||||| || | | ||| || |||||||||||||||||||||||||||||||| | |
|
|
| T |
128756 |
gattgatcactttactacaaattgccctgaagaagaaacaaagtttagtgattgcacttctaacgttttcaggcaaaatggaacgtatacctattggtaa |
128855 |
T |
|
| Q |
273 |
aaaattctccattataacatgacaatcatgggactttgtaccctttaacttgagatccttcatacaaaccaatctcttaatgtttgaggagaacccctct |
372 |
Q |
| |
|
| | ||||| | |||||| |||||||| ||||| |||| ||| |||||| || |||||| | ||||| | |||||||||| ||| |||| ||| |
|
|
| T |
128856 |
catgtgttccatcaaaacatggcaatcatgagacttcaaaccccttatcttgaggtctttcatagataccaaattactaatgtttgatgagtacccttct |
128955 |
T |
|
| Q |
373 |
ggaactttaactccatgaagaaaattacaaagaataattttctcttttcttgagagagtatgagccgctggcggtagaaatgt |
455 |
Q |
| |
|
|||||||||||| |||||||||| | ||| | | ||||||| |||||||| | |||||||||||| || |||| |||||| |
|
|
| T |
128956 |
ggaactttaacttcatgaagaaactgacacaatacttttttctcctttcttgataaagtatgagccgcaggtggtaaaaatgt |
129038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 167 - 455
Target Start/End: Original strand, 34210126 - 34210414
Alignment:
| Q |
167 |
tctcaggattgatgactttgctacatatagccttgaagaaaaaacatagtttagttatggtccatctcaccttttcaggcaaaatggaacgtatacctat |
266 |
Q |
| |
|
|||| |||||||| ||||| ||||| || ||| ||||||| ||||| |||||||| || | | ||| || ||||||||||||||||||||||||||||| |
|
|
| T |
34210126 |
tctctggattgatcactttactacaaatcgccctgaagaagaaacaaagtttagtgattgcacttctaacgttttcaggcaaaatggaacgtatacctat |
34210225 |
T |
|
| Q |
267 |
tggcagaaaattctccattataacatgacaatcatgggactttgtaccctttaacttgagatccttcatacaaaccaatctcttaatgtttgaggagaac |
366 |
Q |
| |
|
||| | | | ||||| | |||||| |||||||| ||||| |||| ||| |||||| || |||||| | || || | |||||||||| ||| || |
|
|
| T |
34210226 |
tggtaacatgtgttccatcaaaacatggcaatcatgagacttcaaaccccttatcttgaggtctttcatagatacaaaattactaatgtttgatgagtac |
34210325 |
T |
|
| Q |
367 |
ccctctggaactttaactccatgaagaaaattacaaagaataattttctcttttcttgagagagtatgagccgctggcggtagaaatgt |
455 |
Q |
| |
|
|| ||||||||||||||| |||||||||| | ||| | | ||||||| |||||||| | |||||||||||| || |||| |||||| |
|
|
| T |
34210326 |
ccttctggaactttaacttcatgaagaaactgacacaatacttttttctcctttcttgataaagtatgagccgcaggtggtaaaaatgt |
34210414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University