View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_high_52 (Length: 224)
Name: NF8521A_high_52
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_high_52 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42888351 - 42888128
Alignment:
| Q |
1 |
taagaaaaaccactttgacacggatatgatttagattctatggtgaatctttctctataatagcagtaacctatattttgatgacaatatcacacgttca |
100 |
Q |
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| T |
42888351 |
taagaaaaaccactttgacacggatatgatttagattctatggtgaatctttctctataatagcagtaacctatattttgatgacaatatcacacgttca |
42888252 |
T |
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| Q |
101 |
catactaaaatgcagtccgtacggttaaaccgtcagtggaaaaatcagtatatatattgatactataaaaaggaaaaggannnnnnnnctttctggcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42888251 |
catactaaaatgcagtccgtacggttaaaccgtcagtggaaaaatcagtatatatattgatactataaaaaggaaaaggattttttttctttctggcaaa |
42888152 |
T |
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| Q |
201 |
tcatatgcacattttatcatgcaa |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
42888151 |
tcatatgcacattttatcatgcaa |
42888128 |
T |
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