View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_high_7 (Length: 526)

Name: NF8521A_high_7
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_high_7
NF8521A_high_7
[»] chr8 (1 HSPs)
chr8 (8-526)||(16023063-16023581)


Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 8 - 526
Target Start/End: Original strand, 16023063 - 16023581
Alignment:
Q  8 aatcaaagaaacatcattagaagtacttgttgtgagtgtactatttgaaaatacattatgtggataaagtgataacctacacttcaatgccgtggcaaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  16023063 aatcaaagaaacatcattagaagtacttgttgtgagtgtactatttgaaaatacattttgtggataaagtgataacctacacttcaatgccgtcgcaaaa 16023162  T
Q  108 cagtaggagactctttgtaatgaatctcctgaagaactcgacaaagccaaaattttaccaagtaataaatttgcctgattgttgtctctgcaaccaacag 207  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||| |||||||| |    
T  16023163 cagaaggagactctttgtaatgaatctcctgaagaactcgacaaagccaaaattttaccaagtaacaaatccgcctgattgttgtctctacaaccaacgg 16023262  T
Q  208 cctcggcacaagccagcagcgtatggaccaagtcaaggccttggttcataccgagactggcttgtgattgtggaatagcaccaaagttgccattcatttc 307  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16023263 cctcggcacaagccaatagcgtatggaccaagtcaagaccttggttcataccgagactggcttgtgattgtggaatagcaccaaagttgccattcatttc 16023362  T
Q  308 aacttcttcgtcttccattgtgatcgttgtatttttgcagatctctaattcttcatcctccaatgtggttggatcatattcaatgacatcttcattcacc 407  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||  ||||| |||||||||    
T  16023363 aacttcttcgtcttccattgtgatcgttgtattttcgcagatctctaattcttcatcctccattgtggttggatcatatccaaaaacatcatcattcacc 16023462  T
Q  408 aaaaagtgatgatcaaaactttgactttgatgattcttctcttgagactcatgatctgcatattgatccatgttgatgaagctatcaacaaaatcatcga 507  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  16023463 aaaaagttatgatcaaaactttgactttgatgattcttctcttgagactcatgatctgaatattgatccatgttgatgaagctatcaacaaagtcatcga 16023562  T
Q  508 cttccgaagaaggtaataa 526  Q
    |||||||||||||||||||    
T  16023563 cttccgaagaaggtaataa 16023581  T

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