View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_high_8 (Length: 494)
Name: NF8521A_high_8
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 474
Target Start/End: Complemental strand, 18219577 - 18219130
Alignment:
| Q |
11 |
catagagtatgaacagaactataagaaatcccattatgatattgtgtgatgttacttgttatagtttactttacattctcatccatctatgccaataaat |
110 |
Q |
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| T |
18219577 |
catagagtatgaacagaattataa-aaatcccattatgatattgtgtgatgttgcttgttatattttactttatattcccatccatctatccgaataaat |
18219479 |
T |
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| Q |
111 |
gttgaagactgatgaaaatcaatactgtaattactgtctttcaagctaactgaaaaggattttgcttgccactgatgaaaagcacttaatgcaggatcaa |
210 |
Q |
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| T |
18219478 |
gttgaagactgatgaaaatcaatactgtaattactggctttcaacctaaatgaaatgaatttttcttgccactgatgaaatgcacttaatgtaggatcaa |
18219379 |
T |
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| Q |
211 |
ataggaatgctgaaaccaacactagtagaagaaccacaaatgtcagaatcattaacaccaccagcgttattgctaggaccaacatcattgacagaaagca |
310 |
Q |
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| T |
18219378 |
atgggaatgctgaaaccaacactagtagaagaaccacaaatgtcagaatcattaacaccaccagtgttattgcttggaccaacatcattgacagaaaaca |
18219279 |
T |
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| Q |
311 |
ttggacaagagacaagggaggaagagaaaggtaataatgtcnnnnnnncaaaatcagaagacacacaaatggtagtaggaagcagagcagcagaggacaa |
410 |
Q |
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| T |
18219278 |
ttgga---------------gaagagaaaggtaataatgtcaaaaaaacaaaatcagcagacacacaaatggtagtaggaagcagagcagcagaggacaa |
18219194 |
T |
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| Q |
411 |
agcagcaaagatagaaaggctgaaaagtggtttccaaatttgcaaaccaagagggacctttatg |
474 |
Q |
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| T |
18219193 |
agcagcaaagatagaaaggctgaaaagtggtttccaaatttgcaaaccaagagggacctttatg |
18219130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 267 - 397
Target Start/End: Complemental strand, 43011226 - 43011096
Alignment:
| Q |
267 |
accaccagcgttattgctaggaccaacatcattgacagaaagcattggacaagagacaagggaggaagagaaaggtaataatgtcnnnnnnncaaaatca |
366 |
Q |
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| T |
43011226 |
accaccagcgtcattgcttggaccaacatcattgacagaaaacattggacatgagacaagggaggaagagaaaggtactaacgtgaacaaaacaaaatca |
43011127 |
T |
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| Q |
367 |
gaagacacacaaatggtagtaggaagcagag |
397 |
Q |
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| T |
43011126 |
gcagacacacaaatggtagtaggaagcagag |
43011096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 43011287 - 43011222
Alignment:
| Q |
182 |
ctgatgaaaagcacttaatgcaggatcaaataggaatgctgaaaccaacactagtagaagaaccac |
247 |
Q |
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| T |
43011287 |
ctgatgaaaagcacttaacgcaggatcaaatgggaatgctgaaaccaacactagtagaagaaccac |
43011222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 43011365 - 43011303
Alignment:
| Q |
75 |
tttactttacattctcatccatctatgccaataaatgttgaagactgatgaaaatcaatactg |
137 |
Q |
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| T |
43011365 |
tttactttatattctcatccatctatgcgaataaatgttgaagactgatgaaaatcaatactg |
43011303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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