View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_1 (Length: 1108)
Name: NF8521A_low_1
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 738; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 144 - 1031
Target Start/End: Original strand, 22158885 - 22159769
Alignment:
| Q |
144 |
aagatagacacttacaatgcaaatgaagaaacttgtaatattaccaaatatataagtgataagaaacatgaggaagagaacaaaaagggaccattacaac |
243 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22158885 |
aagatagacatttacaatgcaaatgtagaaacttgtaatattaccaaatatataagtgataagaaacatgaggaagagaacaaaaagggaccattacaac |
22158984 |
T |
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| Q |
244 |
gtcaccaatcacgtgtccaacgtggactataattaattcattattatctcaaacattactatgcttacattttagatctaatctcacataaaattgaatc |
343 |
Q |
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| T |
22158985 |
gttaccaatcacatgtccaacgtggactataattaattcattattatctcaaacattactatgcttacatttgagatctaatctcacatcaaattgaatc |
22159084 |
T |
|
| Q |
344 |
gtgttcacttatcttgcttcctcctatgttacttggaaagtggtctaaatggagaaaacatcatgtgcatgtactcttctcattcaactttgtctctgtt |
443 |
Q |
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| T |
22159085 |
gtgttcacttatcttgcttcctcct--------tggaaagtggtctaaatggagaaaacatcatgtgcatgtactcttctcattcaactttgtctctgtt |
22159176 |
T |
|
| Q |
444 |
gtgctctctacattgctctcaacttaggccagcctcagacatttctcaacacaaatgcaactcaacaagataatgatatctacttcatcagtgtcaatgg |
543 |
Q |
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| T |
22159177 |
gtgctctctacattgctctcaacttaggccaacctcagacattgctcaacacaaatgcaactcaacaagataatgatatctacttcatcagtgtcaatgg |
22159276 |
T |
|
| Q |
544 |
tggtttcaaaacctttaaccaacaacttcatcttctcaatatggtatgctttcattttcaacctattttgtttcccacttattctcaactttaccacttt |
643 |
Q |
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| T |
22159277 |
tggtttcagaaccattaaccaacaactccatcttctcaatatggtatgctttcattttcaacctattttgtttcccacttattctcaactttaccacttt |
22159376 |
T |
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| Q |
644 |
gatttgattttggagtgtgtttaggtnnnnnnncttaatttaacact-tatcatataaaaacttatttaggcacattaagtgatctcaatcattgatttg |
742 |
Q |
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| T |
22159377 |
gatttgattttggagtgtgtttaggtaaaaaaacttattttaacactatatcatataaaaacttatttaggcacattaagtgatctcaatcattgatttg |
22159476 |
T |
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| Q |
743 |
aaatcagtcagctcacattatacatttacaaatcatcatcaccattgatttgaggttggacggtcaagattaaattaatgcatcacacatcgaatgtgtg |
842 |
Q |
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| T |
22159477 |
aaatcagtcagctcacattatacatttacaaatcatcatcaccattgatttgaggttggacggtcaagattaaattaatgcatcacacatcgaatgtgtg |
22159576 |
T |
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| Q |
843 |
cactgcaattcaaatcccattaacattgtttgcatgttcttctatgaatttcttagcaagaacggctcttactagctcattttccctctcttacgacttt |
942 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22159577 |
cactgcaattcaaatcccattaacattgtttgcatgctgttctatgaatttcttagcaagaacggctcttactagctcattttccctctcttatgacttt |
22159676 |
T |
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| Q |
943 |
aaggaaaatatctgttcatgtgacaatcacacaacttatgacac----attgatgaagcatatatttgtacccaagttgctttgatttggagt |
1031 |
Q |
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| T |
22159677 |
aaggaaaatatctgttcatgtgacaatcacacaacttgtgacacattgattgatgaagcatatatttggaccgaagttgcattgatctggagt |
22159769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 22158699 - 22158808
Alignment:
| Q |
20 |
atcaaatcacatgtagttagattaggaattacaaaaataataaatgaagtttgatgcataatttttgaccattttcaagtcttccaatcttagatttcca |
119 |
Q |
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| T |
22158699 |
atcaaatcacatgtagttagattaggaattacaaaaataataaatgaagtttgatgcataatttttgaccattttcaagtcttccaatcttagatttcca |
22158798 |
T |
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| Q |
120 |
ttataattta |
129 |
Q |
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|||||||||| |
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| T |
22158799 |
ttataattta |
22158808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 1031 - 1086
Target Start/End: Original strand, 22159905 - 22159960
Alignment:
| Q |
1031 |
tatgttcttattttgcagactttgctcactgtttttctttctttccggtgttcatg |
1086 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22159905 |
tatgttcttattttgcagactttgctcactgtatttctttctttccggtgttcatg |
22159960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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