View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_100 (Length: 319)
Name: NF8521A_low_100
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_100 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 3968030 - 3967886
Alignment:
| Q |
1 |
aaaaacttgctatgagaattatttcccaagtgatcaatgtaggccacattataattttccccttttttgatacagtgaaggtaaaacaaggagagatcga |
100 |
Q |
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| T |
3968030 |
aaaaacttgctatgagaattatttcccaagtgatcaatgtaggccacattataattttccccttttttgatacagtgaaggtaaaacaaggagagatcaa |
3967931 |
T |
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| Q |
101 |
tatatatatggttcaaaattgaag-tatagttacggttgcatcac |
144 |
Q |
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| T |
3967930 |
tatatatctggttcaaaattgaagttatagttacggttgcatcac |
3967886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 3967828 - 3967722
Alignment:
| Q |
202 |
cgatcactaatttttcattgctaattataatgaggagtttaatgttttcctccgttccgaaagcttcgttgctaattttatagtatgttccttgctatat |
301 |
Q |
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| T |
3967828 |
cgatcactaatttttcattgctaattataatgaggagtttaatgttttcctccgttcctaaagcttcgttgctaattttatagtatgttccttgatatat |
3967729 |
T |
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| Q |
302 |
attacta |
308 |
Q |
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| T |
3967728 |
attacta |
3967722 |
T |
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