View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_104 (Length: 311)
Name: NF8521A_low_104
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_104 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 6 - 305
Target Start/End: Original strand, 45998359 - 45998658
Alignment:
| Q |
6 |
cgcaactccatatccattcttacaaatattcaaactcaaaaccaaccgttttcgctccnnnnnnnccactttcactatctctacttattataataaaaca |
105 |
Q |
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| T |
45998359 |
cgcaactccatatccattcttacaaatattcaaactcaaaaccaaccgttttcgctccaaaaaaaccactttcactatctctacttattataataaaaca |
45998458 |
T |
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| Q |
106 |
gttaccatttcttttctacgttaccaaaactaatcatttgtctcacacacactaattttgtcttcaacttgaaaatgttccgttttcgtataagcaacac |
205 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45998459 |
gttaccatttcttctctacgttaccaaaactaatcatttgtctcacacacactaattttgtcttcaacttgaaaatgttccgttttcgtataagcaacac |
45998558 |
T |
|
| Q |
206 |
cgtggtcggtgcactcaacatactctccttactcctcggccttgccgctatcgcttcctccgcctacatccacatcaaaggtggttcagactgccaaaag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45998559 |
cgtggtcggtgcactcaacatactctccttactcctcggcctcgccgctatcgcttcctccgcctacatccacatcaaaggtggttcagactgccaaaag |
45998658 |
T |
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