View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_115 (Length: 300)
Name: NF8521A_low_115
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_115 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 66 - 295
Target Start/End: Original strand, 38936148 - 38936377
Alignment:
| Q |
66 |
gtgtcgtcgacgaaggaggggaggtcggagatatgtgaagcgccgtcgtgtgtggcggcgatagtgaacaaagtattgaaagtatccaccggagcgacgg |
165 |
Q |
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| T |
38936148 |
gtgtcgtcgacgaaggaggggaggtcggagatatgtgaagcgccgtcgtgtgtggtggcgatagtgaacaaagtattgaaagtatccaccgtagcgacgg |
38936247 |
T |
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| Q |
166 |
agcacgcggttacaatactgtggagtgtgcgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaagattttgct |
265 |
Q |
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| T |
38936248 |
agcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaagattttgct |
38936347 |
T |
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| Q |
266 |
tctgatgcaaagtaattgttcgccacaagt |
295 |
Q |
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| T |
38936348 |
tctgatgcaaagtaattgttcgccacaagt |
38936377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 295
Target Start/End: Original strand, 43741730 - 43741866
Alignment:
| Q |
159 |
gcgacggagcacgcggttacaatactgtggagtgtgcgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaaga |
258 |
Q |
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| T |
43741730 |
gcgacggagcacgcagtaacgacgctgtggagtgtttgttatctgtttcgcgatcaaaaagcacaagaagcggttacgatggcaaatggattaacgaaga |
43741829 |
T |
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| Q |
259 |
ttttgcttctgatgcaaagtaattgttcgccacaagt |
295 |
Q |
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| T |
43741830 |
tattgttgctaatacagagtaattgttctccacaagt |
43741866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 52890672 - 52890624
Alignment:
| Q |
1 |
atggatgacgcgacgtttgggagagcggatcaggacgaggctttagcag |
49 |
Q |
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| T |
52890672 |
atggatgacgtgacgtttgggagagcggatcaggatgaggctttagcag |
52890624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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