View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_117 (Length: 299)
Name: NF8521A_low_117
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_117 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 23041970 - 23042247
Alignment:
| Q |
7 |
gctttggccagctacaatggtgatgatgaaatctgcatcatcatcaagcattgtaggattaaacctgcacaaggtttatatattttcctatcacataatg |
106 |
Q |
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| T |
23041970 |
gctttggccagctacaatggttatgatttaatctgcatcattatcaagcattgtaggattaaacctgcacaaggtttatatattttccaatcacataatg |
23042069 |
T |
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| Q |
107 |
cttacaaaattttccttaatcctatcaccaataatttaactttgatatatgtgttaggtaattatcctgtttgcttcactaatgcttgggatggcactca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23042070 |
cttacaaaattttccttaatcctatcaccaataatttaactttgatatatgtgttaggtaattatcctgtttgcttcactaatgcttgggatggcactca |
23042169 |
T |
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| Q |
207 |
acttctattcaatcatgtttgtcctgaagttgctaaattcagagaattgttagttgtttcttactaaatcactattat |
284 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23042170 |
acttctattcaatcctgtttgtcctgaagttgctaaattcagagaattgttagttgtttcttactaaatcactattat |
23042247 |
T |
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Back To:
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Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 27588337 - 27588614
Alignment:
| Q |
7 |
gctttggccagctacaatggtgatgatgaaatctgcatcatcatcaagcattgtaggattaaacctgcacaaggtttatatattttcctatcacataatg |
106 |
Q |
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||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27588337 |
gctttggccagctacaatggtcatgatctaatctgcatcattatcaagcattgtaggattaaacctgcacaaggtttatatattttcctatcacataatg |
27588436 |
T |
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| Q |
107 |
cttacaaaattttccttaatcctatcaccaataatttaactttgatatatgtgttaggtaattatcctgtttgcttcactaatgcttgggatggcactca |
206 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27588437 |
cttacaaaattttccttaatactatcaccaataatttaactttgatatatgtgttaggtaattatcctgtttgcttcactaatgcttaggatggcactca |
27588536 |
T |
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| Q |
207 |
acttctattcaatcatgtttgtcctgaagttgctaaattcagagaattgttagttgtttcttactaaatcactattat |
284 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27588537 |
acttctcttcaatcatgtttgtcctgaagttgctaaattcaaagaattgttagttgtttcttactaaatcactattat |
27588614 |
T |
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