View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_123 (Length: 297)
Name: NF8521A_low_123
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_123 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 24637156 - 24636860
Alignment:
| Q |
1 |
gtttaataattcacatattggattcctaagctttgtaagaaaaataaacatgattttttaatttctaaataaaattagttttttggtcatgtttaaatta |
100 |
Q |
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| T |
24637156 |
gtttaatgattcacaaattggattcctaagctttgtaagaaaaataaacatgattttttaatttctaaataaaattagttttttggtcatgtttaaatta |
24637057 |
T |
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| Q |
101 |
tatggattccccgaaaaagaagtgatctgtgattctctttatgcaggcattatacagtgcctctcaacactggctattcccccaagatttatgaggttga |
200 |
Q |
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| T |
24637056 |
tatggattccccgaaaaagaagtgatctgtgattctctttatgcaggcattatacagtgcctctcaacactggctattcccccaagatttatgaggttga |
24636957 |
T |
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| Q |
201 |
cattgactcaggttgtgaccacacttgggttcagtgtgatgcaccatgtataggttttatcaaggtgaagtcaaacttagatcaggcatcattctga |
297 |
Q |
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| T |
24636956 |
cattgactcagtttgtgaccacacttgggttcagtgtgatgcaccatgtaaaggttttatcaaggtgaagtcaaacttagatcaggcatcattctga |
24636860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 32 - 297
Target Start/End: Complemental strand, 24715669 - 24715394
Alignment:
| Q |
32 |
tttgtaagaaaaataaacatgattttttaatttctaaataaaattagttttt-tggtcatgtttaaattatatggattccccgaaaaagaa----gtgat |
126 |
Q |
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| T |
24715669 |
tttgtgagaaaaagaaacatgatttttcaatttcgaaatgaaattagtttttattgtcaagtttaaattatatggattccctgaagaaaaataaagtgat |
24715570 |
T |
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| Q |
127 |
ctgtgattctctttatgcaggcattatacagtgc---ctctcaacactggctattcccccaagatttatgaggttgacattgactcaggttgtgaccaca |
223 |
Q |
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| T |
24715569 |
acgtggttctctttatgcaggcattgtacagtgtgatctatcaacattggctatgcctctaagctttatgacgttgacattgactcaggttgtgacagca |
24715470 |
T |
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| Q |
224 |
cttgggttcagtgtgatg--caccatgtataggttttatcaaggtgaagtcaaacttagatcaggcatcattctga |
297 |
Q |
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| T |
24715469 |
cttgggttcagtgtgatgcacaccttgtaaaggttgcatcaaggcgaagtcaaacttagacctggtatcattctga |
24715394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 256
Target Start/End: Complemental strand, 10330825 - 10330707
Alignment:
| Q |
138 |
tttatgcaggcattatacagtgcctctcaacactggctattcccccaagatttatgaggttgacattgactcaggttgtgaccacacttgggttcagtgt |
237 |
Q |
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| T |
10330825 |
tttatgtaggtattatactgtctctctcaacattggctatcctccaaagctttatgaccttgatatcgactcaggtagtgacctcacttgggttcagtgt |
10330726 |
T |
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| Q |
238 |
gatgcaccatgtataggtt |
256 |
Q |
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| T |
10330725 |
gatgcaccatgtaaaggtt |
10330707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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