View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_125 (Length: 296)

Name: NF8521A_low_125
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_125
NF8521A_low_125
[»] chr1 (4 HSPs)
chr1 (163-296)||(12606579-12606712)
chr1 (164-296)||(46566569-46566701)
chr1 (162-286)||(49195411-49195535)
chr1 (163-286)||(40908315-40908438)
[»] chr7 (3 HSPs)
chr7 (11-165)||(32553860-32554019)
chr7 (164-296)||(10646051-10646183)
chr7 (11-123)||(32554983-32555096)
[»] chr5 (2 HSPs)
chr5 (164-293)||(43469551-43469680)
chr5 (164-296)||(12870155-12870287)
[»] chr4 (2 HSPs)
chr4 (164-296)||(23538161-23538293)
chr4 (164-286)||(31525455-31525577)
[»] chr3 (1 HSPs)
chr3 (163-286)||(33365924-33366047)
[»] scaffold0238 (2 HSPs)
scaffold0238 (164-253)||(5100-5189)
scaffold0238 (246-296)||(5323-5373)
[»] chr2 (2 HSPs)
chr2 (164-286)||(3081203-3081325)
chr2 (164-232)||(10983161-10983228)
[»] chr6 (2 HSPs)
chr6 (163-296)||(27765317-27765444)
chr6 (17-92)||(2216953-2217027)
[»] chr8 (1 HSPs)
chr8 (163-232)||(44495211-44495280)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 163 - 296
Target Start/End: Complemental strand, 12606712 - 12606579
Alignment:
Q  163 tatcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccatattttccctccctaatccataattaatgctaatcccatatg 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  12606712 tatcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccttattttccctccctaatccataattaatgctaatcccatctg 12606613  T
Q  263 ccaaccacaccctaaatctcagcctttgatctga 296  Q
    ||||||||||||||||||||||||||||||||||    
T  12606612 ccaaccacaccctaaatctcagcctttgatctga 12606579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 164 - 296
Target Start/End: Original strand, 46566569 - 46566701
Alignment:
Q  164 atcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccatattttccctccctaatccataattaatgctaatcccatatgc 263  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||||| |||   ||||||||||||||| ||| |||    
T  46566569 atcctttattataaaagccagatttgatgagctggcagtgttgccctaatcacttcttattttccctcccaaatttgtaattaatgctaatctcatctgc 46566668  T
Q  264 caaccacaccctaaatctcagcctttgatctga 296  Q
    |||||||| ||||||||||||||||||||||||    
T  46566669 caaccacatcctaaatctcagcctttgatctga 46566701  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 49195535 - 49195411
Alignment:
Q  162 ttatcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccatattttccctccctaatccataattaatgctaatcccatat 261  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||  ||||||||| ||||| ||| |    
T  49195535 ttatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctgtaattaatgttaatctcatct 49195436  T
Q  262 gccaaccacaccctaaatctcagcc 286  Q
    ||||||||||| ||||||| |||||    
T  49195435 gccaaccacacactaaatcacagcc 49195411  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 40908315 - 40908438
Alignment:
Q  163 tatcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccatattttccctccctaatccataattaatgctaatcccatatg 262  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||     | |||||| ||||| ||| ||    
T  40908315 tatcctttactataaaagccagacttgatgagctggcagtgttgccctaatcatccctcattttccctccctaacatgaatttaatgttaatctcatctg 40908414  T
Q  263 ccaaccacaccctaaatctcagcc 286  Q
    ||||||||||  ||||||||||||    
T  40908415 ccaaccacacgttaaatctcagcc 40908438  T

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Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 32553860 - 32554019
Alignment:
Q  11 tgagagagacatttctagccaaacttctccgatccaaaattttaatacactataaaattatatgt-aaaataatacaatgacagaagtat----gcatac 105  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    ||||||    
T  32553860 tgagagagacatttctagccaaacttctccgatccaaaattataatacactataaaattatatgtaaaaataatacaatgacagaagtatgcccgcatac 32553959  T
Q  106 ggtcgctcacacgctcacgcgcacacatacatgtgtgtgttcctatttgcgcataattat 165  Q
    | |||||| |||||||| |||||||||||||||||||||| | |||||||||||||||||    
T  32553960 gatcgctcgcacgctcaggcgcacacatacatgtgtgtgtccttatttgcgcataattat 32554019  T

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Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 10646183 - 10646051
Alignment:
Q  164 atcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccatattttccctccctaatccataattaatgctaatcccatatgc 263  Q
    |||||||| | |||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| ||||| ||||||||||||||| ||| |||    
T  10646183 atcctttattctaaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctcccaaatccgtaattaatgctaatctcatctgc 10646084  T
Q  264 caaccacaccctaaatctcagcctttgatctga 296  Q
    |||||||||||||||||||||||||||||||||    
T  10646083 caaccacaccctaaatctcagcctttgatctga 10646051  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 32554983 - 32555096
Alignment:
Q  11 tgagagagacatttctagccaaacttctccgatccaaaattttaatacactataaaattatatgtaaaataatacaatgaca-gaagtatgcatacggtc 109  Q
    |||||||||||| |||||||||||||||||||||  ||||| ||||| || |  |||||||||||||||||||| || ||||  ||||| |||||||  |    
T  32554983 tgagagagacatatctagccaaacttctccgatcacaaattataatatacaaagaaattatatgtaaaataatataaggacacaaagtacgcatacgacc 32555082  T
Q  110 gctcacacgctcac 123  Q
    |||| |||||||||    
T  32555083 gctcgcacgctcac 32555096  T

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Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 164 - 293
Target Start/End: Complemental strand, 43469680 - 43469551
Alignment:
Q  164 atcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccatattttccctccctaatccataattaatgctaatcccatatgc 263  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| ||||| ||||||||| ||||  ||| |||    
T  43469680 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctcccaaatccgtaattaatgttaatttcatctgc 43469581  T
Q  264 caaccacaccctaaatctcagcctttgatc 293  Q
    ||||||||||||||||||||||||||||||    
T  43469580 caaccacaccctaaatctcagcctttgatc 43469551  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 164 - 296
Target Start/End: Original strand, 12870155 - 12870287
Alignment:
Q  164 atcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccatattttccctccctaatccataattaatgctaatcccatatgc 263  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |   ||||||||||||||||| |||||||||||||   ||    |    
T  12870155 atcctttactataaaagccagacttgatgagctggcagtgttgccctaatcacttctgtttttccctccctaatccgtaattaatgctaacttcaacaac 12870254  T
Q  264 caaccacaccctaaatctcagcctttgatctga 296  Q
    |||||||||||||||||||||||||||||||||    
T  12870255 caaccacaccctaaatctcagcctttgatctga 12870287  T

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Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 23538293 - 23538161
Alignment:
Q  164 atcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccatattttccctccctaatccataattaatgctaatcccatatgc 263  Q
    |||||||| ||| |||| ||||||||||| ||| |||||||||||||||||||||  |||||| |||||||||||  ||||||||||||||| ||| |||    
T  23538293 atcctttattattaaagtcagacttgatgagctagcagtgttgccctaatcactcattatttttcctccctaatctgtaattaatgctaatctcatctgc 23538194  T
Q  264 caaccacaccctaaatctcagcctttgatctga 296  Q
    ||||||||||||||||||| |||||||||||||    
T  23538193 caaccacaccctaaatctcggcctttgatctga 23538161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 164 - 286
Target Start/End: Complemental strand, 31525577 - 31525455
Alignment:
Q  164 atcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccatattttccctccctaatccataattaatgctaatcccatatgc 263  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||  ||||||||| ||||| ||  |||    
T  31525577 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctgtaattaatgttaatctcaactgc 31525478  T
Q  264 caaccacaccctaaatctcagcc 286  Q
    ||||||||| ||||||| |||||    
T  31525477 caaccacacactaaatcacagcc 31525455  T

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Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 33365924 - 33366047
Alignment:
Q  163 tatcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccatattttccctccctaatccataattaatgctaatcccatatg 262  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||| |||||||||| ||||| ||  ||    
T  33365924 tatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctataattaatgttaatctcaactg 33366023  T
Q  263 ccaaccacaccctaaatctcagcc 286  Q
    |||||||||| ||||||| |||||    
T  33366024 ccaaccacacactaaatcacagcc 33366047  T

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Target: scaffold0238 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 5100 - 5189
Alignment:
Q  164 atcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccatattttccctccctaatccataattaatgctaa 253  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||    
T  5100 atcctttactataaaagccagatttgatgtgctggcagtgttgtcctaatcactccttatttttcctccttaatccataattaatgctaa 5189  T

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Target: scaffold0238; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 5323 - 5373
Alignment:
Q  246 aatgctaatcccatatgccaaccacaccctaaatctcagcctttgatctga 296  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  5323 aatgcaaatcccatctgccaaccacaccctaaatctcagcctttgatctga 5373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 286
Target Start/End: Original strand, 3081203 - 3081325
Alignment:
Q  164 atcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccatattttccctccctaatccataattaatgctaatcccatatgc 263  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||  |  | |||||| ||||| ||| |||    
T  3081203 atcctttactattaaagccagacttgatgagctggcagtgttgccctaatcatccctcattttccctccctaacacgcatttaatgttaatctcatctgc 3081302  T
Q  264 caaccacaccctaaatctcagcc 286  Q
    ||| |||||  ||||||||||||    
T  3081303 caatcacacattaaatctcagcc 3081325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 10983228 - 10983161
Alignment:
Q  164 atcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccatattttccctcc 232  Q
    |||||||| |||||||||||||||||||| ||||||||| |||||||||||| |||  |||||||||||    
T  10983228 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaatcaatcctgattttccctcc 10983161  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 296
Target Start/End: Original strand, 27765317 - 27765444
Alignment:
Q  163 tatcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccatattttccctccctaatccataattaatgctaatcccatatg 262  Q
    ||||||||| ||| ||||| |||||||||| |||||      |||||||||||||     ||||||||||||||||||||||||||||||||| ||  ||    
T  27765317 tatcctttattattaaagctagacttgatgagctgg------tgccctaatcacttttgtttttccctccctaatccataattaatgctaatctcaactg 27765410  T
Q  263 ccaaccacaccctaaatctcagcctttgatctga 296  Q
    ||||||||||| ||||||| || |||||||||||    
T  27765411 ccaaccacaccataaatcttagtctttgatctga 27765444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 2216953 - 2217027
Alignment:
Q  17 agacatttctagccaaacttctccgatccaaaattttaatacactataaaattatatgtaaaataatacaatgaca 92  Q
    ||||| ||||||||| |||||||  | |||||||| ||||| ||||||||||||| ||||||| ||||||| ||||    
T  2216953 agacacttctagccacacttctcata-ccaaaattgtaatatactataaaattatttgtaaaagaatacaaggaca 2217027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 44495211 - 44495280
Alignment:
Q  163 tatcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccatattttccctcc 232  Q
    ||||||||||||| ||||| |||||||||| |||| ||   | |||||||||||||| || |||||||||    
T  44495211 tatcctttactattaaagctagacttgatgagctgtcaccttagccctaatcactccctaatttccctcc 44495280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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