View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_126 (Length: 296)
Name: NF8521A_low_126
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_126 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 288
Target Start/End: Complemental strand, 25769667 - 25769388
Alignment:
| Q |
4 |
attaaacatctcataactactcaaaaatcaatcacataggttaaagaacctaagggtgtgaaaagccataggacgactgccgttaggggatggatccaga |
103 |
Q |
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| T |
25769667 |
attaaacatctcataactactcaaaa-tcaatcacataggttaaagaacctaagggtgtgaaaagccataggacgactgccgtta-gggatggatccaga |
25769570 |
T |
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| Q |
104 |
aacatagtatgcaatggctaaaataatcaataataaattctggttgagacaacaacaaattcatcatcaatgacgctagatagaaattagggtgaagaaa |
203 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
25769569 |
aacatagtatgtaatggccaaaataatcaataataaattctg---gagacaacaacaaattcatcatcaatgacgctagatacaaattagggtcaagaaa |
25769473 |
T |
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| Q |
204 |
ctaatattacgtcgcccnnnnnnnattaaccgtgggattaaacaaatccaacgacactaatctaatgttaatcttttaacttaca |
288 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
25769472 |
ctaatattacgtcgccctttttttattaaccgtgggattaaacaaatccaacgacactaatttaatgttaatctttaaacttaca |
25769388 |
T |
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