View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_127 (Length: 296)

Name: NF8521A_low_127
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_127
NF8521A_low_127
[»] chr2 (1 HSPs)
chr2 (19-296)||(42234852-42235129)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 42235129 - 42234852
Alignment:
Q  19 ataatttacgttggtaattttactacacagaagtttcgtttgactgcgattgaaggatctgcatacacaggaacaaatggattgggtcaaactagtaagt 118  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42235129 ataatttatgttagtaattttactacacagaagtttggtttgactgagattgaaggatctgcatacacaggaacaaatggattgggtcaaactagtaagt 42235030  T
Q  119 gcttattgcatcaaatgtacagttttgggttgattctattctatggaagtgttttaagtttagggagcttgttgtttatttatgtagatgagagtcctgc 218  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42235029 gcttattgcaacaaatgtacagttttgggttgattctattctatggaagtgttttaagtttagggagcttattgtttatttatgtagatgagagtcctgc 42234930  T
Q  219 caattgggaaaacgtgcttgaagggattcgcaaaatgatgtattcgataaacactaccggtgatcgggaagatgctga 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42234929 caattgggaaaacgtgcttgaagggattcgcaaaatgatgtattcgatagacactaccggtgatcgggaagatgctga 42234852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University