View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_13 (Length: 493)
Name: NF8521A_low_13
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 13293098 - 13292638
Alignment:
| Q |
18 |
aaagggtttggccttgcgaccactcaggttagaggttatttccaggttaaggcatatcaaacaatttcgatgtttatgttaaagaagacaattttagtac |
117 |
Q |
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| T |
13293098 |
aaagggtttggccttgcgaccactcaggttagaggttatttccaggttaaggcatatcaaacaatttcgatgtttatgttaaagaagacaattttagtac |
13292999 |
T |
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| Q |
118 |
tgaaaatatatacaagtaaccagtgattcatattttcaannnnnnn------aacaagactaggctcttaattggaatcatatgaagttgttaaa-aact |
210 |
Q |
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| T |
13292998 |
tgaaaatatatacaagtaaccagtgattcatattattattatttttttttttaataagactaggctcttaattggaatcatatgaagttcttaaacaact |
13292899 |
T |
|
| Q |
211 |
ttagaatataggaattctactagtatatgaaagggtt-tgaagtccagacccattaagtaaattattcatatcataccagtgttgtttgttactatgtaa |
309 |
Q |
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| T |
13292898 |
ttagaatataggaattctactagtatatgaaagggttatgaagtccagacccattaagtaaattattcatatcataccagtgttgtttgttactatgtaa |
13292799 |
T |
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| Q |
310 |
taaagtcaatattaaatggatttaacttaatgtttaaaacacaaacaatacgtcaacaatgcatgcatttggaacctcaaattggaagatatcatgattt |
409 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13292798 |
caaagtcaaaattaaatggatttaacttaatgtttaaaacacaaacaatacgtaaacaatgcatacatttggaacctcaaattggaagatatcatgattt |
13292699 |
T |
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| Q |
410 |
tgttgagagaaattaaacaatattcaatatatgcacataactgacgaaaaagcagaagaaa |
470 |
Q |
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| T |
13292698 |
tgttgagagaaattaaacaatattcaatacatgcacatatctgacgaagaagcagaagaaa |
13292638 |
T |
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