View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_131 (Length: 293)

Name: NF8521A_low_131
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_131
NF8521A_low_131
[»] chr3 (17 HSPs)
chr3 (40-292)||(5155861-5156108)
chr3 (95-266)||(5159940-5160112)
chr3 (154-254)||(46479515-46479615)
chr3 (161-253)||(46497677-46497769)
chr3 (151-250)||(46526729-46526830)
chr3 (154-257)||(47397619-47397722)
chr3 (154-276)||(51942855-51942977)
chr3 (155-243)||(46544183-46544271)
chr3 (177-256)||(45884033-45884112)
chr3 (181-254)||(46473681-46473754)
chr3 (153-250)||(45902676-45902775)
chr3 (171-241)||(46549300-46549370)
chr3 (137-253)||(46490417-46490533)
chr3 (168-231)||(4581745-4581808)
chr3 (160-237)||(46538714-46538792)
chr3 (193-228)||(4614165-4614200)
chr3 (177-238)||(16025229-16025290)
[»] chr4 (4 HSPs)
chr4 (40-254)||(35162049-35162264)
chr4 (53-241)||(35155038-35155230)
chr4 (177-242)||(15555760-15555825)
chr4 (162-219)||(28286744-28286801)
[»] chr8 (3 HSPs)
chr8 (154-254)||(9693018-9693117)
chr8 (154-253)||(9675997-9676096)
chr8 (161-231)||(21464513-21464583)
[»] chr2 (3 HSPs)
chr2 (160-254)||(20169332-20169426)
chr2 (160-254)||(20358860-20358954)
chr2 (170-254)||(20144358-20144442)
[»] chr7 (4 HSPs)
chr7 (176-252)||(17708020-17708096)
chr7 (176-251)||(17717844-17717919)
chr7 (195-252)||(16721916-16721973)
chr7 (195-252)||(17698930-17698987)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 40 - 292
Target Start/End: Original strand, 5155861 - 5156108
Alignment:
Q  40 ctagcatccgattaatttagaaccataatatatgaaaattagactaacaaaatgttaatttattctattgaaattcttccaaaaagaatttatttgttct 139  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||    
T  5155861 ctagcatccaattaatttagaaccataatatatgaaaattagactaacaaaaagttaatttgttctattgaaatacttccaaaaagaatttatttgttct 5155960  T
Q  140 atttctatagttgatttt-aaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttatt 238  Q
    ||      ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5155961 at------agtggatttttaaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttatt 5156054  T
Q  239 aaagaacttcttcctccaaaatcagttggaagcttaaccctcctcacctttgct 292  Q
    ||||||||||||||||||| ||||||||  |||||||||| ||||| |||||||    
T  5156055 aaagaacttcttcctccaagatcagttgatagcttaacccgcctcatctttgct 5156108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 95 - 266
Target Start/End: Original strand, 5159940 - 5160112
Alignment:
Q  95 taatttattctattgaaattcttccaaaaagaatttatttgttctatttctatagttgatttt-aaatttgatttggttttaaaggctgttgaagtgact 193  Q
    |||||| |||||||||| | |||||||||||||| ||||||||||||||  ||| |||||||| ||||||||| | ||||| |||||| |||||||||||    
T  5159940 taatttcttctattgaattacttccaaaaagaatctatttgttctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgact 5160039  T
Q  194 aaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctccaaaatcagttg 266  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  5160040 aaagaagtgaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctctaagatcagttg 5160112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 46479515 - 46479615
Alignment:
Q  154 ttttaaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcct 253  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46479515 ttttaaatttgatatggttttaaaggctgttgaagtgaccaatgaagtgaattcatgggctgaaaaagagacaaatggccttattaaagaacttcttcct 46479614  T
Q  254 c 254  Q
    |    
T  46479615 c 46479615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 46497677 - 46497769
Alignment:
Q  161 tttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcct 253  Q
    |||||| ||||||||||||||||||||||||  || |||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  46497677 tttgatatggttttaaaggctgttgaagtgaacaatgaagtgaatttatgggctgaaagagagacaaatggtcttattaaagaacttcttcct 46497769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 250
Target Start/End: Complemental strand, 46526830 - 46526729
Alignment:
Q  151 tgattttaaatttgatttggtttta--aaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttc 248  Q
    |||||||| ||||||| || |||||  |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  46526830 tgattttatatttgatatgattttataaaggttgttgaagtgattaaagaagtgaatttatgggctgaaaaagagacaaatggccttattagagaacttc 46526731  T
Q  249 tt 250  Q
    ||    
T  46526730 tt 46526729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 257
Target Start/End: Complemental strand, 47397722 - 47397619
Alignment:
Q  154 ttttaaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcct 253  Q
    ||||||||||||| ||| ||||||||||| ||||||| |||||||||  |||||||||||  |||| |||||||||||  ||||||||||| || |||||    
T  47397722 ttttaaatttgatatgggtttaaaggctgatgaagtggctaaagaagtaaatttatgggccaaaaatgagacaaatggttttattaaagaaatttttcct 47397623  T
Q  254 ccaa 257  Q
    ||||    
T  47397622 ccaa 47397619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 276
Target Start/End: Original strand, 51942855 - 51942977
Alignment:
Q  154 ttttaaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcct 253  Q
    ||||||||||||| |||||||  |||||   ||||||  ||| |||| |||  |||||| |||||||||||||||||||||||||||||||||| |||||    
T  51942855 ttttaaatttgatatggttttttaggctccagaagtgcgtaaggaagtgaacatatgggttgaaaaagagacaaatggccttattaaagaacttattcct 51942954  T
Q  254 ccaaaatcagttggaagcttaac 276  Q
    |||  ||||||||  ||||||||    
T  51942955 ccaggatcagttgatagcttaac 51942977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 46544183 - 46544271
Alignment:
Q  155 tttaaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaaga 243  Q
    |||| ||||||| | |||||||||||| |||||| ||  ||||||| |||||||||||||||||||||||||||||| ||||| |||||    
T  46544183 tttatatttgatgttgttttaaaggcttttgaagggagaaaagaagtgaatttatgggctgaaaaagagacaaatggtcttataaaaga 46544271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 45884112 - 45884033
Alignment:
Q  177 aggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctcca 256  Q
    |||| ||||||||||| || || | |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||    
T  45884112 aggcggttgaagtgaccaatgacgtgaatttatgggctgaaaaagagacaaatggtcttattaaagaaattctttctcca 45884033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 46473681 - 46473754
Alignment:
Q  181 tgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctc 254  Q
    |||||||||||| || |||| |||  ||||||||||||||||||||||||| |||||||||||| |||||||||    
T  46473681 tgttgaagtgaccaatgaagtgaacatatgggctgaaaaagagacaaatggtcttattaaagaaattcttcctc 46473754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 45902676 - 45902775
Alignment:
Q  153 attttaaatttgatttggtttta--aaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttctt 250  Q
    |||||| ||||||| ||||||||  |||| || | |||| | |||| ||| ||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  45902676 attttatatttgatatggttttataaaggttgattaagtaattaaaaaagtgaatttatgggctgaaaaagagacaaatggccttattaatgaatttctt 45902775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 46549370 - 46549300
Alignment:
Q  171 ttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaa 241  Q
    ||||||||||   ||||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||    
T  46549370 ttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgaaaaagagacaaatggtcttattaaa 46549300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 253
Target Start/End: Original strand, 46490417 - 46490533
Alignment:
Q  137 tctatttctatagttgattttaaattt-gatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggcctt 235  Q
    |||||||  ||| |||||||| ||||| ||| |||||||||||||   ||||||| | ||||||| |||||||||||||| |||| ||||||||||  ||    
T  46490417 tctatttgaataattgattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgcaaaa-agacaaatggtatt 46490515  T
Q  236 attaaagaacttcttcct 253  Q
    |||||| |||||||||||    
T  46490516 attaaacaacttcttcct 46490533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 4581808 - 4581745
Alignment:
Q  168 tggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatgg 231  Q
    ||||||||||||||   ||||||  | |||||| ||||||||||||||||||||||||||||||    
T  4581808 tggttttaaaggctaccgaagtgcttcaagaagtgaatttatgggctgaaaaagagacaaatgg 4581745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 46538714 - 46538792
Alignment:
Q  160 atttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctg-aaaaagagacaaatggccttat 237  Q
    ||||||| | |||||||||||  |||||||||  ||||||| |||||| ||||||| ||||| ||||||||||||||||    
T  46538714 atttgatattgttttaaaggcacttgaagtgagaaaagaagtgaatttgtgggctgaaaaaaaagacaaatggccttat 46538792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 4614200 - 4614165
Alignment:
Q  193 taaagaagggaatttatgggctgaaaaagagacaaa 228  Q
    |||||||| |||||||||||||||||||||||||||    
T  4614200 taaagaagtgaatttatgggctgaaaaagagacaaa 4614165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 16025229 - 16025290
Alignment:
Q  177 aggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttatt 238  Q
    |||| ||||||||||| || || | ||||||||||||| |||| ||||||||||| ||||||    
T  16025229 aggcagttgaagtgacaaatgatgtgaatttatgggctaaaaaggagacaaatggtcttatt 16025290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 254
Target Start/End: Original strand, 35162049 - 35162264
Alignment:
Q  40 ctagcatccgattaatttagaaccataatatatgaaaattagactaacaaaatgttaatttattctattgaaattcttccaaaaagaatttatttgttct 139  Q
    ||||||||| | |||||||  ||| | |||| |||||| ||||||| || || ||| |||| |||||||||||| ||    ||||||||| |  || |||    
T  35162049 ctagcatccaactaatttaacaccgttatatttgaaaactagactagcagaaagttgatttcttctattgaaatactggtgaaaagaattcaactgatct 35162148  T
Q  140 atttctatagttgattt-taaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttatt 238  Q
    ||||  ||   |||||| |||||||||  |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  35162149 atttgcattactgatttgtaaatttgacatggttttaaaggctattgaagtgactaaagaagtgaatttatgggctgaaaaagaaacaaatggccttatt 35162248  T
Q  239 aaagaacttcttcctc 254  Q
    ||||||||||||||||    
T  35162249 aaagaacttcttcctc 35162264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 35155038 - 35155230
Alignment:
Q  53 aatttagaaccataatatatgaaaattagactaacaaaatgttaatttattctattgaaattcttccaaaaagaatttatttgttctatttctatagttg 152  Q
    ||||||| ||| |||| | |||||||||||||| || || ||| |||| |||||||||||| |||   || |||||| | ||| |||||| | |||  ||    
T  35155038 aatttagcaccgtaatgtgtgaaaattagactagcagaaagttgatttcttctattgaaatacttgtgaagagaattcaattgatctattgc-ataactg 35155136  T
Q  153 attt-taaatttgatt----tggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaa 241  Q
    |||| |||||||||||    ||||||| |||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  35155137 atttataaatttgattgacatggttttgaaggctattgaagtgactaaagaagtgaatttatgggctaaaaaagagacaaatggccttattaaa 35155230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 15555760 - 15555825
Alignment:
Q  177 aggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaag 242  Q
    |||||||||||||||| || ||||  |||| ||||| |||||| ||||||||||||||||||||||    
T  15555760 aggctgttgaagtgaccaatgaagtcaattcatgggttgaaaaggagacaaatggccttattaaag 15555825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 28286801 - 28286744
Alignment:
Q  162 ttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaa 219  Q
    ||||| |||||| ||||| |||||||||||| |||||||  |||||||||||||||||    
T  28286801 ttgatatggtttcaaaggttgttgaagtgacaaaagaagtaaatttatgggctgaaaa 28286744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 9693117 - 9693018
Alignment:
Q  154 ttttaaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcct 253  Q
    ||||||||||||| || ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  9693117 ttttaaatttgatatg-ttttaaaggctattgaagtgactaaacaagtgaatttatgggctgaaaaagagacatatggccttattaaagaaattcttcct 9693019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 9676096 - 9675997
Alignment:
Q  154 ttttaaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcct 253  Q
    ||||||||||||| |  | || |||||| |||||||||||||||| | ||||||||||||||||||||| ||| | ||||||||||||||| ||||||||    
T  9676096 ttttaaatttgatattttatttaaggctattgaagtgactaaagaggtgaatttatgggctgaaaaagaaacatacggccttattaaagaaattcttcct 9675997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 21464583 - 21464513
Alignment:
Q  161 tttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatgg 231  Q
    |||||| | |||||||||||| | |||| |||  ||||||  |||||||||||||||||||||||||||||    
T  21464583 tttgatattgttttaaaggctctcgaagcgacagaagaagcaaatttatgggctgaaaaagagacaaatgg 21464513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 160 - 254
Target Start/End: Complemental strand, 20169426 - 20169332
Alignment:
Q  160 atttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctc 254  Q
    ||||||| ||||||| |||| |||||||||||| ||| ||| |||||||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  20169426 atttgatgtggttttgaaggttgttgaagtgacaaaaaaagtgaatttatggtcggaaaaagagacaattggccttattaaagaacttcttcctc 20169332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 20358860 - 20358954
Alignment:
Q  160 atttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctc 254  Q
    |||||||  |||||| |||| |||||||||||| ||| ||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  20358860 atttgatgcggttttgaaggttgttgaagtgacaaaaaaagtgaatttatggtctgaaaaagagacaattggccttattaaagaacttcttcctc 20358954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 20144358 - 20144442
Alignment:
Q  170 gttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctc 254  Q
    |||||||||| |||||||||||| ||| ||| |||| ||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  20144358 gttttaaaggttgttgaagtgacaaaaaaagtgaatctatggtcggaaaaagagacaattggccttattaaagaacttcttcctc 20144442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 17708020 - 17708096
Alignment:
Q  176 aaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcc 252  Q
    ||||||| ||||||||   |||||| |||||||||||||||||| |||||||| || ||||||||| | ||||||||    
T  17708020 aaggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcc 17708096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 17717844 - 17717919
Alignment:
Q  176 aaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttc 251  Q
    ||||||| ||||||||  ||||||| |||| ||||||||||||| |||||||| || ||||||||| | |||||||    
T  17717844 aaggctgatgaagtgagaaaagaagtgaatgtatgggctgaaaaggagacaaaagggcttattaaaaatcttcttc 17717919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 16721916 - 16721973
Alignment:
Q  195 aagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcc 252  Q
    |||||| |||||| ||||||||||| |||||||| || ||||||||| | ||||||||    
T  16721916 aagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttcc 16721973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 17698930 - 17698987
Alignment:
Q  195 aagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcc 252  Q
    |||||| |||||| ||||||||||| |||||||| || ||||||||| | ||||||||    
T  17698930 aagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttcc 17698987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University