View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_136 (Length: 289)
Name: NF8521A_low_136
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_136 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 41966561 - 41966844
Alignment:
| Q |
1 |
gttacttatctaagatgaggacacgagtgttatagtgaaactacgactttcaactctttcaaaagacaaacccaaccattccaaatggaaaaatccaatc |
100 |
Q |
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| T |
41966561 |
gttatttatctaagatgaggacacgagtgttatagtgaaactacgactttcaactctttcaaaagacaaacccaaccattccaaatggaaaaatccaatc |
41966660 |
T |
|
| Q |
101 |
caagactatagtattacttttctctgtctacccacttgaggttattggaactctcctcctcgttatgtgatattaatgactacccaaagcccagcattcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41966661 |
caagactatagtattacttttctctgtctacccacttgaggttattggaactctcctcctcgttatgtgatattaatgactacccaaagcccagcattcc |
41966760 |
T |
|
| Q |
201 |
cacactcttcaaatattttcttaagactaagtcttaatgcgtaaattgtttattacacaaccgacccatctcaaagatcataat |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41966761 |
cacactcttcaaatattttcttaagactaagtcttaatgcgtaaattgtttattacactaccgacccatctcaaagatcataat |
41966844 |
T |
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