View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_139 (Length: 287)
Name: NF8521A_low_139
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_139 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 31114516 - 31114667
Alignment:
| Q |
21 |
cttttctcccaatcaaataagcttt-agaaccaatgtccattcaaagaggtggatcccattatgccactcactctccattatctgcattgatgatagaag |
119 |
Q |
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| T |
31114516 |
cttttctcccaatcaaataagcttttagaaccaatgtcctttctaagagttgggtcccattatgccactcactctccattatctgcattgatgatagaag |
31114615 |
T |
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| Q |
120 |
cttgtatcccataaacacagtgaactgggttcactttggacgattcatggac |
171 |
Q |
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| T |
31114616 |
cttgtatcccagaaacacagtgaactgggttcactttggtcgattcatggac |
31114667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 31114675 - 31114730
Alignment:
| Q |
232 |
ttttttataaatgggttgaagcatcaaaacgacgtcatctttatctatccttggtt |
287 |
Q |
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| T |
31114675 |
ttttttataaatgggttgaagcatcaaaacgacgtcatctttatctatccttggtt |
31114730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 237
Target Start/End: Original strand, 31088499 - 31088647
Alignment:
| Q |
86 |
actcactctccattatctgcattgatgatagaagcttgtatcccataaacacagtgaactgggttcactttggacgattcatggacgcaattatgttcaa |
185 |
Q |
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| T |
31088499 |
actcactctctgttgtccgctttgatgatataagcttctatcaaagaaacacagagaagtgggttcactttcgttgattcgtggatacaattatgttcaa |
31088598 |
T |
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| Q |
186 |
cccccactctcaacgacaactaaccctcaaatctttttggctcgagtttttt |
237 |
Q |
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| T |
31088599 |
cccacactctca---ataagtaacccttaaatcttatagtctcgagtttttt |
31088647 |
T |
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