View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_14 (Length: 493)
Name: NF8521A_low_14
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 5e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 266 - 478
Target Start/End: Original strand, 5155644 - 5155849
Alignment:
| Q |
266 |
tatgatatatttggattgccaaagctatattgatcaaagaaattctgtgtatgtgacgaaactttgttattcaaatgcctctttaaattttatagcacta |
365 |
Q |
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| T |
5155644 |
tatgatatatttggattgccaaagctatattgatcaaagaaattctgtgtatgtgacgaaactttgttattcaaatgcctctttaaattttata------ |
5155737 |
T |
|
| Q |
366 |
aagagaaataaacttccctgatcctttggcatacatgattgttcaactaaaactattctagagatgtatcttctaagaaaacgattgatgaatacagctt |
465 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5155738 |
aagagaaataactttccc-gatcctttggcatacatgattgttcaactaaaactattctagagatgtatcttctatgaaaacgattgatgaatacagctt |
5155836 |
T |
|
| Q |
466 |
ccctttccttaat |
478 |
Q |
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||||||||||||| |
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| T |
5155837 |
ccctttccttaat |
5155849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 5155573 - 5155621
Alignment:
| Q |
6 |
atatccccctctttttgctgcaatccatgacctgcttttattttccatt |
54 |
Q |
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| T |
5155573 |
atatccccctctttttgctgcaatccatgacatgcttttattttccatt |
5155621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 50328070 - 50328132
Alignment:
| Q |
88 |
attttattttatttcatatcctaatttaaagaaaatgttattttacttatgaagcatagataa |
150 |
Q |
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| T |
50328070 |
attttattttatttcataacctaatttagagcaaacgttgttttacatttgaagcatagataa |
50328132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 50328189 - 50328246
Alignment:
| Q |
93 |
attttatttcatatcctaatttaaagaaaatgttattttacttatgaagcatagataa |
150 |
Q |
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| T |
50328189 |
attttatttcataacctaatttagagcaaacgttgttttacatttgaagcatagataa |
50328246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 377
Target Start/End: Original strand, 20154832 - 20154915
Alignment:
| Q |
294 |
attgatcaaagaaattctgtgtatgtgacgaaactttgttattcaaatgcctctttaaattttatagcactaaagagaaataaa |
377 |
Q |
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|||||| |||||||| | |||||| || || |||| ||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
20154832 |
attgattaaagaaatcccatgtatggcacaaaccttttttattcaaatgcctcttcaaattttatagtactaaagagaaataaa |
20154915 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 20144166 - 20144219
Alignment:
| Q |
327 |
ctttgttattcaaatgcctctttaaattttatagcactaaagagaaataaactt |
380 |
Q |
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|||| |||||||||| ||||| |||||||| || ||||||||||||||||||| |
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| T |
20144166 |
cttttttattcaaatatctcttcaaattttacagtactaaagagaaataaactt |
20144219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 377
Target Start/End: Complemental strand, 28286990 - 28286910
Alignment:
| Q |
298 |
atcaaagaaattctgtgtatgtgacgaaactttgttattcaaatgcctctttaaa-ttttatagcactaaagagaaataaa |
377 |
Q |
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|||||| ||||||| || |||||| | | |||| ||||||||||||||||| ||| |||||||| |||||||||||||||| |
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| T |
28286990 |
atcaaataaattctatgcatgtgatgtaccttttttattcaaatgcctcttcaaatttttatagtactaaagagaaataaa |
28286910 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 9677380 - 9677318
Alignment:
| Q |
68 |
tctaccttcacaaacagtttattttattttatttcatatcctaatttaaagaaaatgttatttt |
131 |
Q |
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|||||||||||||||| || | |||||||||||||||| ||||||||| || |||| ||||||| |
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| T |
9677380 |
tctaccttcacaaacaatt-agtttattttatttcataacctaatttagagcaaattttatttt |
9677318 |
T |
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