View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_147 (Length: 282)
Name: NF8521A_low_147
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_147 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 5 - 271
Target Start/End: Complemental strand, 18107414 - 18107148
Alignment:
| Q |
5 |
agccaagccagttaaatattccttaaagtaggaaataaacatacaatacctgaatatcaaatgttaggaaagatatggaatgaagaactgtgcgtttggg |
104 |
Q |
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| T |
18107414 |
agccaagccagttaaatattccttaaagtaggaaataaacatacaatacctgaatatcaaatgttaggcaagatatggaatgaagaactgtgcgtttggg |
18107315 |
T |
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| Q |
105 |
aatccaactttccacaataacacttttgagacacaggaccaaacatgttggaagtttgcctagaaaattaacttaagattgtaaatacaaaaacctttga |
204 |
Q |
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| T |
18107314 |
aatccaactttccacaataacacttttgagacacaggaccaaacatgttggaagtttgcctagaaaattaacttaagattgtaaatacaaaaacctttga |
18107215 |
T |
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| Q |
205 |
taaaactttgttccttacttcattttaatctctatgtaacatgcatgtataaccatacacttaaaca |
271 |
Q |
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| T |
18107214 |
taaaactttgttccttacttcattttaatctctatgtaacatgcatgtataaccatacacttaaaca |
18107148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 18097955 - 18097742
Alignment:
| Q |
5 |
agccaagccagttaaatattccttaaagtaggaaataaacatacaatacctgaatatcaaa-tgttaggaaagatatggaatgaagaactgtgcgtttgg |
103 |
Q |
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| T |
18097955 |
agccaaaccagttaaagattgctcaaagtaggaaataaacatacaatacctgaacatcaaaatgtttcgcaagatgtggaattaagaagtgtgtgtttgg |
18097856 |
T |
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| Q |
104 |
gaatccaactttccacaataacacttttgagacacaggaccaaacatgttggaagtttgcctagaaaattaacttaagattgtaaatacaaaaacctttg |
203 |
Q |
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| T |
18097855 |
gaatccaactttccaaaataacatttttgagacaaaggaccaaacaggttcgaaattgcgcaagaaaattaacttcagattgtatatacaaaaacctgtg |
18097756 |
T |
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| Q |
204 |
ataaaactttgttc |
217 |
Q |
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| T |
18097755 |
ataaaattttgttc |
18097742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 209
Target Start/End: Complemental strand, 12720010 - 12719902
Alignment:
| Q |
99 |
tttgggaatccaactttccacaataacacttttgagacacaggaccaaacatgttggaagtttgcctagaaaattaacttaagattgtaaatacaaaaac |
198 |
Q |
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| T |
12720010 |
tttgggaattcaactttccatgataacacttttgagacacaggac--atcatgctgtaaattggccaagaaaactaacatcggattgtaaatagaaaaac |
12719913 |
T |
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| Q |
199 |
ctttgataaaa |
209 |
Q |
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|||||||||| |
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| T |
12719912 |
gtttgataaaa |
12719902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 18138547 - 18138589
Alignment:
| Q |
166 |
agaaaattaacttaagattgtaaatacaaaaacctttgataaa |
208 |
Q |
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| T |
18138547 |
agaaaattaacttcagattgtaaatactaaaacctgtgataaa |
18138589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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