View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8521A_low_15 (Length: 491)
Name: NF8521A_low_15
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8521A_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Complemental strand, 30574101 - 30573653
Alignment:
| Q |
16 |
ggacatcataagaaggaatacaacaatccgataaaaggtcatggttttattgtgtgaagctcacttaccggttccnnnnnnnnnnnnnnnnnnaaaaaac |
115 |
Q |
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| T |
30574101 |
ggacatgataagaaggaatacaacaatccgataaaaggtcatggttttattgtgtgaagctcacttaccggttcctttttttttattttt---aaaaaac |
30574005 |
T |
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| Q |
116 |
tcagtatgtgacctaaggaccgactaatccgaaaggtcaaatcccacatcgacttacggggacccttttaaagttagagcaaaactctatatggactatc |
215 |
Q |
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| T |
30574004 |
tcaatatctgacctaaggaccgactaatccgaaaggtcaaatcccacatcgacttgtggggacccttttaaagttagagcaaaactctatatggactatc |
30573905 |
T |
|
| Q |
216 |
ccaccgaactgctgtggaaaatcacattaatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgttta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30573904 |
ccaccgaactgctgtggaaaatcacattaatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgttta |
30573805 |
T |
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| Q |
316 |
tccaaacatatgcttaatggtttatcagtgtatttatatttggtttgtgagagagattaaaagaaatatcactactagtcatggttacattcatattata |
415 |
Q |
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| T |
30573804 |
tccaaacatatgcttaatggtttatcagtgtatttatatttggtttgtgagagagattaaaagaaatatcattactagtcatggttacattcatattata |
30573705 |
T |
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| Q |
416 |
aaaagtttacccttaatattatcctcaacggatctcacaatgatatctgaaa |
467 |
Q |
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| T |
30573704 |
aaaagtttacccataatattatcctcaacggatctcacaatgatatctgaaa |
30573653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 229 - 367
Target Start/End: Complemental strand, 30570415 - 30570277
Alignment:
| Q |
229 |
gtggaaaatcacattaatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30570415 |
gtggaaaatcacattaatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgc |
30570316 |
T |
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| Q |
329 |
ttaatggtttatcagtgtatttatatttggtttgtgaga |
367 |
Q |
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| T |
30570315 |
ttaatggtttattagtgtatttatatttggcttgtgaga |
30570277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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