View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8521A_low_158 (Length: 273)

Name: NF8521A_low_158
Description: NF8521A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8521A_low_158
NF8521A_low_158
[»] chr7 (13 HSPs)
chr7 (1-234)||(4653338-4653571)
chr7 (79-200)||(4697312-4697433)
chr7 (18-197)||(4846076-4846255)
chr7 (102-186)||(4672542-4672626)
chr7 (4-197)||(4666790-4666986)
chr7 (15-197)||(4712133-4712315)
chr7 (102-197)||(4630782-4630877)
chr7 (102-197)||(4643526-4643621)
chr7 (104-182)||(4863792-4863870)
chr7 (102-200)||(4783980-4784078)
chr7 (102-200)||(4816409-4816507)
chr7 (94-150)||(4662893-4662949)
chr7 (141-197)||(4647388-4647444)
[»] chr4 (1 HSPs)
chr4 (4-200)||(18925789-18925985)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 4653571 - 4653338
Alignment:
Q  1 gaatttgattggcgtatcaagaataaaggtgatagagttttccagatatttatccatgatttcttggctgaaccaaatgctgacgtgatttcatggagca 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  4653571 gaatttgattggcgtatcaaggataaaggtgatagagttttccagatatttatacatgatttcttggctgaaccaaatgctgatgtgatttcatggagca 4653472  T
Q  101 atgctcgtttggttcctgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatcttacaatcaagctaca 200  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4653471 atgctcgtttgattcctgttcataaggattatgttgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatcttacaatcaagctaca 4653372  T
Q  201 gagagcaactaaccacacaaaatatcgtgatgtc 234  Q
    |||||||||||||||||||||||| || ||||||    
T  4653371 gagagcaactaaccacacaaaataccgcgatgtc 4653338  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 4697312 - 4697433
Alignment:
Q  79 gctgacgtgatttcatggagcaatgctcgtttggttcctgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagag 178  Q
    ||||| |||||||| ||||| | | ||| | |||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||||     
T  4697312 gctgatgtgatttcttggagtactactcctatggttcctgttcataaagattatgctgtgtctatgcactctcaagaaggaagctctcaaattgaaagac 4697411  T
Q  179 ttaatcttacaatcaagctaca 200  Q
    |||||||| |||||||||||||    
T  4697412 ttaatctttcaatcaagctaca 4697433  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 4846076 - 4846255
Alignment:
Q  18 caagaataaaggtgatagagttttccagatatttatccatgatttcttggctgaaccaaatgctgacgtgatttcatggagcaatgctcgtttggttcct 117  Q
    |||||||||||||||||||||||| |||||||||||| ||||| | |||||||||| | ||||||| |||||||  |||||   || |    || |||||    
T  4846076 caagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaactatatgctgatgtgattttttggagtggtggtaacatgattcct 4846175  T
Q  118 gttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatcttacaatcaagct 197  Q
    ||||||||||||||||||||||  ||  ||||| || | |||||| || |||||||||||||||||||| ||||||||||    
T  4846176 gttcataaggattatgctgtgaaaatctactctcaaaatggaagctctgaaattgaaagagttaatctttcaatcaagct 4846255  T

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Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 4672626 - 4672542
Alignment:
Q  102 tgctcgtttggttcctgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatctt 186  Q
    ||||||| |||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  4672626 tgctcgtatggttcctgttcataaggattatgctgtcactatgtactctcaagaaggaagctctcaaattgaaagagttaatctt 4672542  T

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Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 4666986 - 4666790
Alignment:
Q  4 tttgattggcgtatcaagaataaaggtgatagagttttccagatatttatccatgatttcttggctgaaccaaatgctgacgtgatttcatggagcaatg 103  Q
    |||||||||| ||||||||||  ||||||||||||||| ||||| |||||  ||||| |  ||||||||||||  ||||||||| |||  ||||| | ||    
T  4666986 tttgattggcatatcaagaatccaggtgatagagtttttcagatttttatagatgatattatggctgaaccaagggctgacgtgctttattggagtagtg 4666887  T
Q  104 ct---cgtttggttcctgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatcttacaatcaagct 197  Q
     |   ||| |||||||||||||||||||||||||  |||||||| | ||| ||| ||| |||  |||||||||||||||||||||| |||| |||||    
T  4666886 gtgttcgtatggttcctgttcataaggattatgccttgactatggattctcaaggagggagccgtcaaattgaaagagttaatctttcaattaagct 4666790  T

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Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 4712133 - 4712315
Alignment:
Q  15 tatcaagaataaaggtgatagagttttccagatatttatccatgatttcttggctgaaccaaatgctgacgtgatttcatggagcaatgctcgtttggtt 114  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| | |||||||||| | | ||||| |||||||  |||||   || |    || ||    
T  4712133 tatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgatttactggagtggtggtaacatgatt 4712232  T
Q  115 cctgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatcttacaatcaagct 197  Q
    |||||||||||||||||||||||||  ||| ||||| || | |||||| || |||||||||||||||| ||| |||| |||||    
T  4712233 cctgttcataaggattatgctgtgaaaatgtactctcaaaatggaagctctgaaattgaaagagttaacctttcaattaagct 4712315  T

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Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 197
Target Start/End: Complemental strand, 4630877 - 4630782
Alignment:
Q  102 tgctcgtttggttcctgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatcttacaatcaagct 197  Q
    ||||||| ||||||||  |||||||||||||| ||||  |||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  4630877 tgctcgtatggttcctactcataaggattatgttgtgcttatgtactctcaagaaggaagctctcaaattgaaagagttaatctttcaatcaagct 4630782  T

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Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 197
Target Start/End: Complemental strand, 4643621 - 4643526
Alignment:
Q  102 tgctcgtttggttcctgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatcttacaatcaagct 197  Q
    |||||||||||||||||||||||||||||||||  || ||||| ||| | ||||||||||| ||||| ||||||||| ||||||| ||||||||||    
T  4643621 tgctcgtttggttcctgttcataaggattatgcaatgtctatggactatcaagaaggaagctctcaacttgaaagagctaatctttcaatcaagct 4643526  T

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Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 4863870 - 4863792
Alignment:
Q  104 ctcgtttggttcctgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaa 182  Q
    ||||| ||||||||||||||||||||||| ||||| ||||  ||||||||||||||||| |||||||||||||||||||    
T  4863870 ctcgtatggttcctgttcataaggattatactgtgtctataaactctgaagaaggaagctctcaaattgaaagagttaa 4863792  T

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Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 4783980 - 4784078
Alignment:
Q  102 tgctcgtttggttcctgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatcttacaatcaagctaca 200  Q
    ||||| ||||||||||||||||||||||||||| |||||||||   ||| |||  |||||| |||||||||||| |||||||||| | |||||||||||    
T  4783980 tgctcctttggttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctaca 4784078  T

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Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 4816409 - 4816507
Alignment:
Q  102 tgctcgtttggttcctgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatcttacaatcaagctaca 200  Q
    ||||| ||| ||||||||||||||||||||||| |||||||||   ||| | |  |||||| |||||||||||| |||||||||| | |||||||||||    
T  4816409 tgctccttttgttcctgttcataaggattatgccgtgactatgggttctcatggcggaagctctcaaattgaaaaagttaatctttcgatcaagctaca 4816507  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 4662949 - 4662893
Alignment:
Q  94 tggagcaatgctcgtttggttcctgttcataaggattatgctgtgactatgcactct 150  Q
    ||||| |||| |||| |||||||||||||||||||||||| |||||||||| |||||    
T  4662949 tggagtaatggtcgtatggttcctgttcataaggattatggtgtgactatgtactct 4662893  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 4647444 - 4647388
Alignment:
Q  141 tatgcactctgaagaaggaagcactcaaattgaaagagttaatcttacaatcaagct 197  Q
    |||| ||||| ||| |||||| | |||||||||||||||||||||| ||||||||||    
T  4647444 tatgtactctcaaggaggaaggaatcaaattgaaagagttaatctttcaatcaagct 4647388  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 18925789 - 18925985
Alignment:
Q  4 tttgattggcgtatcaagaataaaggtgatagagttttccagatatttatccatgatttcttggctgaaccaaatgctgacgtgatttcatggagcaatg 103  Q
    |||||||||| ||| |||||| |||||||||||||||| ||||| |||||  |||||   |||||||||| ||||||||| ||||||   |||||   ||    
T  18925789 tttgattggcatataaagaatcaaggtgatagagtttttcagatttttatagatgataatttggctgaacgaaatgctgatgtgattcattggagtggtg 18925888  T
Q  104 ctcgtttggttcctgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatcttacaatcaagctaca 200  Q
    ||||| |||||||||||||||||||||||| |||||||||| |||||  |||||||||| | |||||| |||||||||||||| |||| ||||||||    
T  18925889 ctcgtatggttcctgttcataaggattatgttgtgactatgtactctcgagaaggaagctcgcaaattaaaagagttaatctttcaataaagctaca 18925985  T

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